Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq210 136 4e-27 seq2251 107 2e-18 seq10174 96.9 3e-15 seq4589 87.8 2e-12 seq30086 82.4 8e-11 >seq210 Length=64943 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||||||||| || ||||| | | ||||||||||||||||||||||||| Sbjct 42399 GCCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGA 42340 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||| | |||||||| | | |||| ||||| ||||||||||| || Sbjct 42339 CAGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGG 42280 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | | || | | || ||| ||||| Sbjct 42279 AATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTCCA 42221 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||| || ||||| |||||||| || || || ||||| Sbjct 42220 CCTCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCAT 42172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 || ||||| || | ||| | || | ||| | ||||||||||||||||||||||||| Sbjct 30369 CAACCGCCACGAAGACGAAGCACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCA 30428 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || ||| || || || || || ||||| | | | || | |||||| |||||||| Sbjct 30429 GACAGAGTGCGACCATCTTCCAGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGT 30488 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || || || ||||| ||| | || | || | | || | | ||| ||| ||| Sbjct 30489 GGAATGCCCTCCTTGTC-TTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTC 30547 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| | || | || || || || || || || ||||| || |||||| Sbjct 30548 CACCTCCAAGGTAATAGTCTTCCCCGTAAGCGTCTTCACAAATATTTGCATG 30599 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || ||||||||| || ||| || || || | || ||||| | | Sbjct 39675 GACTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCCAACTGCTTACCCGCA 39616 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | |||||| |||||||| || || || || ||||| |||||| || | Sbjct 39615 AATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATTTTCGCCTTCACA 39556 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | | ||||||||| | || | ||| || |||||||| || || Sbjct 39555 TTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGCGTCTTC 39496 Query 138601 ACAAAAATCTGCATG 138615 ||||| || |||||| Sbjct 39495 ACAAATATTTGCATG 39481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | ||||||| ||||||||||||||||| || |||||| || || Sbjct 39462 ACCAAATGCAAAGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATCTTCC 39403 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | || || || | | |||| | ||||||||||||||| || || || || ||||| | Sbjct 39402 AACTGCTTTCCTGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGG 39343 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || || | | || | | ||| | | ||||||||| | || | || || Sbjct 39342 ATCTTCGCCTTCACATTCTCAATCGAGTCACTTGGCTCCACCTCCAATGTAATAGTCTTG 39283 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| ||||| ||||| || ||||| Sbjct 39282 CCCGTCAACGTTTTCACAAAGATTTGCAT 39254 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || |||||||| || || || || || | || ||||||| Sbjct 30633 GACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTCCAACTGCTTACCGGCG 30692 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||||| ||||||||||||||| || || || || ||||| ||| || || | Sbjct 30693 AAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACA 30752 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | | ||||||||| | || | ||| || ||||||| || || Sbjct 30753 TTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTC 30812 Query 138601 ACAAAAATCTGCATG 138615 ||||| || |||||| Sbjct 30813 ACAAATATTTGCATG 30827 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || |||||||| || || || || || | || ||||||| Sbjct 40131 GACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTCCAACTGCTTACCGGCG 40072 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||||| ||||||||||||||| || || || || ||||| ||| || || | Sbjct 40071 AAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACA 40012 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | | ||||||||| | || | ||| || ||||||| || || Sbjct 40011 TTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTC 39952 Query 138601 ACAAAAATCTGCATG 138615 ||||| || |||||| Sbjct 39951 ACAAATATTTGCATG 39937 >seq2251 Length=6394 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | | |||||| | ||| | | || ||||||||||||||||||||| Sbjct 1230 CCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAG 1171 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| ||||| | || || |||| | |||| || || || ||||| || ||| Sbjct 1170 AGAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGGTGGT 1111 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| |||| | ||| | | || | | |||| | | ||| || Sbjct 1110 ATGCCCTCCTTGTC-TTGAATTTTCGCTTTGACGTTCTCAATAGAGTCGCTAGGCTCAAC 1052 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 1051 CTCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCAT 1004 >seq10174 Length=1708 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||| ||||||||| || | ||| || || | ||| || || | Sbjct 1072 TTGACTCCTTCTGAATATTGTAGTCGGACAAGGACCGCCCATCTTCTAATTGCTTGCCAG 1131 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | | || |||||||| ||||||||||| ||||| || ||||| ||| |||||| || Sbjct 1132 CAAAAATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC-TTGAATTTTTGCCTTC 1190 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | | ||| | | || ||||| | || | || || || || |||||| Sbjct 1191 ACATTCTCAATAGAGTCAGAAGGTTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTT 1250 Query 138598 TTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 1251 TTGACAAAAATCTGCAT 1267 >seq4589 Length=3505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 52327 TGCCGTGCGTTCGCAAA-AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 |||| ||||| ||| || ||||| | |||||| | |||||||||| || | | || Sbjct 2604 TGCCATGCGT-CGCTAAGAAGGCGGATTGGGCACTTAAGTGGATCGCGAATAAGAGGGCA 2546 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || || ||||| ||||||| ||||| | ||||| || || || ||||| Sbjct 2545 TCGTACGCTGAGCGTGTGGTGGCTTTCGCTGCTATTGAGGGTGTTTTCTTCTCCGGTTCG 2486 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 ||||| | || |||| | || | | || | ||||| || || || ||||| ||| Sbjct 2485 TTTGCTTCTATTTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTTACCTTCAGTAAC 2426 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 ||| |||| ||||| ||||| || ||||| ||||||||||| || Sbjct 2425 GAGCTGATCAGTCGCGATGAAGGCCTTCACACCGACTTTGCGTGTCT 2379 >seq30086 Length=500 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || |||||||| || || || || || | || ||||||| Sbjct 163 GACTCCTTTTGTATATTGTAGTCAGACAAGGTGCGTCCATCTTCCAACTGCTTACCGGCG 222 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||||| ||||||||||||||| || || || || ||||| ||| || || | Sbjct 223 AAGATTAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACA 282 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | | ||||||||| | || | ||| || ||||||| || || Sbjct 283 TTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTC 342 Query 138601 ACAAAAATCTGCATG 138615 ||||| || |||||| Sbjct 343 ACAAATATTTGCATG 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496075737101520