Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq30086 91.5 1e-13 seq210 91.5 1e-13 >seq30086 Length=500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||||||||| || ||||||||||| || || | Sbjct 129 GCCACCACGAAGTCGAAGCACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGA 188 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| |||| ||||| || || ||| | || ||||||||||| || |||| || Sbjct 189 CAAGGTGCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGG 248 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCC 39669 | ||| || ||||| || || || | || ||| | || || || ||| Sbjct 249 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTTGGC--TCC 306 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| ||||| || || || || || || || || || || |||||| Sbjct 307 ACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCACAAATATTTGCATG 357 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||| | || ||| ||||||||||| || |||| Sbjct 357 GCCACCACGAAGTCGAAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGA 416 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| ||||| || || ||| | || ||||||||||||||||||| || Sbjct 417 CAGAGTGCGACCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGG 476 Query 39612 TACGCCTTCTTTGTC 39626 | ||| || ||||| Sbjct 477 GATGCCCTCCTTGTC 491 >seq210 Length=64943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||||||||| || ||||||||||| || || | Sbjct 30599 GCCACCACGAAGTCGAAGCACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGA 30658 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| |||| ||||| || || ||| | || ||||||||||| || |||| || Sbjct 30659 CAAGGTGCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGG 30718 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCC 39669 | ||| || ||||| || || || | || ||| | || || || ||| Sbjct 30719 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTTGGC--TCC 30776 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| ||||| || || || || || || || || || || |||||| Sbjct 30777 ACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCACAAATATTTGCATG 30827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||| | || ||| ||||||||||| || |||| Sbjct 30827 GCCACCACGAAGTCGAAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGA 30886 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| ||||| || || ||| | || ||||||||||||||||||| || Sbjct 30887 CAGAGTGCGACCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGG 30946 Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || ||||| | || || || || || | | ||| || || Sbjct 30947 GATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATGGAATCACTGGGC--TCA 31004 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| |||||| || || ||||||| || || || ||||| |||||| Sbjct 31005 ACTTCCAGAGTAATAGTCTTCCCCGTTAGCGTCTTCACAAAGATTTGCATG 31055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||||||||| || ||||||||||| || || | Sbjct 40165 GCCACCACGAAGTCGAAGCACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGA 40106 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| |||| ||||| || || ||| | || ||||||||||| || |||| || Sbjct 40105 CAAGGTGCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGG 40046 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCC 39669 | ||| || ||||| || || || | || ||| | || || || ||| Sbjct 40045 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTTGGC--TCC 39988 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| ||||| || || || || || || || || || || |||||| Sbjct 39987 ACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCACAAATATTTGCATG 39937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||| | || ||| ||||||||||| || |||| Sbjct 39937 GCCACCACGAAGTCGAAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGA 39878 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| ||||| || || ||| | || ||||||||||||||||||| || Sbjct 39877 CAGAGTGCGACCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGG 39818 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG--TGTCTGCGCTTTCC 39669 | ||| || ||||| || || || | || | | | | ||| || ||| Sbjct 39817 GATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATGGAATCACTGGGC--TCC 39760 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| |||||||| || || |||| || || || || || |||||| Sbjct 39759 ACCTCCAGTGTAATTGTCTTGCCAGTTAGCGTCTTCACAAATATTTGCATG 39709 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||||||| | ||| || ||||||||||| || |||| Sbjct 39709 GCCACCACGAAGTCGGAGCACCAAATGAAGAGTCGACTCCTTTTGTATATTGTAGTCGGA 39650 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| ||||| || || || |||| || ||||||||||| |||| || Sbjct 39649 CAGAGTGCGACCATCTTCCAACTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGG 39590 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCC 39669 | ||| || ||||| ||||| || | || ||| | || || || ||| Sbjct 39589 AATGCCCTCCTTGTCTTGGATTTTCGCCTTCACATTCTCTATCGAGTCACTTGGC--TCC 39532 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| ||||| || || || || | || || || || || |||||| Sbjct 39531 ACCTCCAAGGTAATCGTCTTGCCAGTCAGCGTCTTCACAAATATTTGCATG 39481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347242207735403