Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4951 93.3 5e-14 seq4589 84.2 3e-11 seq1281 84.2 3e-11 >seq4951 Length=3275 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 107071 CCCAGCC-CACTTT--GAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 107127 |||| || |||||| ||||| | ||||||| | || || | || || || | ||| Sbjct 2193 CCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCCTCGAT 2252 Query 107128 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 107187 ||| ||||| | | || | ||||| || |||||||| | | || || ||||| Sbjct 2253 ACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTGTGCATTAGGCGTCCCAGC 2312 Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTTGTCGTATGTCT 107246 || ||||| ||||||| || ||||| ||| || || ||||| | ||| |||| Sbjct 2313 GTTAAAGAGCGTTGGTGAGGCATGAATCAACC-ACTTTCCAGACATTAGATTGTACGTCT 2371 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 | | | ||| ||| | |||||| ||||| || || || | || |||||||||||||| | Sbjct 2372 CAATGGCAGCATCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACATGTACT 2431 Query 107307 GGGGTGTTTCC 107317 | ||| | ||| Sbjct 2432 GAGGTCTCTCC 2442 >seq4589 Length=3505 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || || ||||| || || || || || |||| || || Sbjct 2385 GCAAAGTCGGTGTGAAGGCCTTCATCGCGACTGATCAGCTCGTTACTGAAGGTAAGACCA 2444 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | |||| |||||| ||| || || ||||||||||| | Sbjct 2445 GGCATGAGACCACGCTTCTTGAGCCAAAAAATAGAAGCA-AACGAACCGGAGAAGAAAAC 2503 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA 117452 |||||| | | || || || | | ||||| ||| | || ||| | | | Sbjct 2504 ACCCTCAATAGCAGCGAAAGCCACCACACGCTCAGCGTACGATGCCCTCTTATTCGCGAT 2563 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || | |||||| | ||||||||| | | ||||| | ||||| ||||| | ||| Sbjct 2564 CCACTTAAGTGCCCAATCCGCCTTCTTAGCGACGCATGGCAGCGTTTGAATGGCGTTAAA 2623 Query 117513 TAA 117515 ||| Sbjct 2624 TAA 2626 >seq1281 Length=11230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || || | |||||||||||||||| | ||||| ||||| || |||||| || ||| Sbjct 1934 TTACCTCGCAAAGGAAAGACGCCATAGCGGTCACGCCCAACCACCCCGAGACCGGCCACC 1875 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 ||||| | || || ||||| ||||| |||| || || ||||| | || | | Sbjct 1874 GCAAGAGACTTGGCCGAATCTCCCTCAGTGAGGATAAGAGTACAATACTGGGAGTTCTTT 1815 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGG 169530 || || || | ||| || || |||| ||| ||||| || | | ||||| Sbjct 1814 GTCCCTGCATCGTTGGCATCATCCAGCTTTGGAATCCCTTTTAATTTGG 1766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589758886096840