Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2251 172 1e-37 seq10174 150 4e-31 seq210 138 3e-27 seq30086 98.7 2e-15 >seq2251 Length=6394 Score = 172 bits (190), Expect = 1e-37 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||||||||| || || || || || |||||||| ||||| |||| ||||||| | Sbjct 1221 AGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGC 1162 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||| || || |||||||||||||| |||||||| || ||||| || Sbjct 1161 CCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGGTGGTATGCCCTCC 1102 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| |||||||||||||| | ||| | || || ||||| || Sbjct 1101 TTGTCTTGAATTTTCGCTTTGACGTTCTCAATAGAGTCGCTAGGCTCAACCTCAAGAGTG 1042 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || || || || | ||||| || || | |||||||| Sbjct 1041 ATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCATTT 1002 >seq10174 Length=1708 Score = 150 bits (166), Expect = 4e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| ||||| || ||||| || ||||||||||| |||| |||| | | ||||||||| Sbjct 1059 ACAAGATGAAGCGTTGACTCCTTCTGAATATTGTAGTCGGACAAG-GACCGCCCATCTTC 1117 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || || || ||||| || || ||||| ||||| || || || |||||||| Sbjct 1118 TAATTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTG 1177 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| ||| || |||||||| | ||| ||| ||| || |||||||| | ||||| Sbjct 1178 AATTTTTGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAACCTCAAGGGTGATGGTCTT 1237 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | ||||| Sbjct 1238 GCCGGTGAGAGTTTTGACAAAAATCTGCAT 1267 >seq210 Length=64943 Score = 138 bits (152), Expect = 3e-27 Identities = 152/201 (76%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| |||||||||||||| ||||| || | ||||| | |||||||| | |||||| || Sbjct 39451 AGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATCTTCCAACTGCTTTCC 39392 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||| ||||| | || |||||||| || |||||||| || |||||||| || || ||| Sbjct 39391 TGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTCGCCTT 39332 Query 195063 GACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || |||||||| | ||| |||| ||||| || | |||| ||||| || ||||| Sbjct 39331 CACATTCTCAATCGAGTC---ACTTGGCTCCACCTCCAATGTAATAGTCTTGCCCGTCAA 39275 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||||| || || | |||||| Sbjct 39274 CGTTTTCACAAAGATTTGCAT 39254 Score = 134 bits (148), Expect = 3e-26 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| |||||||| ||||| || | ||||| | || || || | ||| Sbjct 42374 TGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGACAGAGTGCGACCGTCCTCCAACTGT 42315 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || ||||||||||| || |||||||| || ||||| ||||| || Sbjct 42314 TTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTC 42255 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || ||||| || | || ||| ||||| || ||||||| |||||| || Sbjct 42254 GCCTTCACATTCTCTATCGAATC---ACTCGGCTCCACCTCCAGGGTAATCGTCTTGCCA 42198 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||| ||||| | |||||| Sbjct 42197 GTAAGAGTTTTGACGAAGATTTGCAT 42172 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| ||||| |||||||| ||||| || | ||||| | |||||||| Sbjct 30390 ACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGTGCGACCATCTTCC 30449 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || || || | || || ||||| || |||||||| || ||||||||| Sbjct 30450 AGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 30509 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| || | ||| ||| ||||| || | ||||| ||| Sbjct 30510 ATCTTCGCCTTCACATTCTCTATCGAGTC---ACTCGGCTCCACCTCCAAGGTAATAGTC 30566 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | |||||| Sbjct 30567 TTCCCCGTAAGCGTCTTCACAAATATTTGCAT 30598 Score = 120 bits (132), Expect = 7e-22 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || ||||| |||||||| |||| ||||| | |||||||| | |||| Sbjct 30852 TGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCCAACTGC 30911 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| |||||||| | || || || || || || ||||| || ||||||||||| || Sbjct 30912 TTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTGAATCTTA 30971 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || |||||||||| || ||| || ||||| || |||| ||||| || Sbjct 30972 GCCTTTACATTCTCAATGGAATC---ACTGGGCTCAACTTCCAGAGTAATAGTCTTCCCC 31028 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || | |||||| Sbjct 31029 GTTAGCGTCTTCACAAAGATTTGCAT 31054 Score = 120 bits (132), Expect = 7e-22 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || ||||| |||||||| |||| ||||| | |||||||| | |||| Sbjct 39912 TGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCCAACTGC 39853 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| |||||||| | || || || || || || ||||| || ||||||||||| || Sbjct 39852 TTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTGAATCTTC 39793 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || |||||||||| || ||| ||||| || || |||| ||||| || Sbjct 39792 GCCTTCACATTCTCAATGGAATC---ACTGGGCTCCACCTCCAGTGTAATTGTCTTGCCA 39736 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || | |||||| Sbjct 39735 GTTAGCGTCTTCACAAATATTTGCAT 39710 Score = 100 bits (110), Expect = 6e-16 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 194959 ATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCG 195017 |||||||| || | |||| || | |||||||| | ||||||||| |||||||| | || Sbjct 40347 ATATTGTAGTCAGACAAG-GTGCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACG 40289 Query 195018 TTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGT 195077 || ||||| || |||||||| || ||||||||||| || ||| || ||||| || | Sbjct 40288 CTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGA 40229 Query 195078 GTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 ||| ||| ||||| || | ||||| ||||| || || | || || || || | Sbjct 40228 GTC---ACTCGGCTCCACCTCCAAGGTAATAGTCTTCCCCGTAAGCGTCTTCACAAATAT 40172 Query 195135 TTGCAT 195140 |||||| Sbjct 40171 TTGCAT 40166 >seq30086 Length=500 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || ||||| |||||||| |||| ||||| | |||||||| | |||| Sbjct 382 TGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTCCAACTGC 441 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| | || || || || || || ||||| || ||||||||||| || Sbjct 442 TTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTGAATCTT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109053849423797