Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10174 87.8 3e-12 seq4589 87.8 3e-12 >seq10174 Length=1708 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | || | ||| || |||||| || || || Sbjct 1040 ACCACCACGAAGACGAAGCACAAGATGAAGCGTTGACTCCTTCTGAATATTGTAGTCGGA 1099 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || || || | || || ||||| || ||||||||||| | | ||| ||||| || || Sbjct 1100 CAAGGACCGCCCATCTTCTAATTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGG 1159 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| ||||| || ||||| |||| || || | ||| || Sbjct 1160 GATACCCTCCTTGTCTTGAATTTTTGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAAC 1219 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || || | ||||| | || |||||||| Sbjct 1220 CTCAAGGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 1267 >seq4589 Length=3505 Score = 87.8 bits (96), Expect = 3e-12 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 39416 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGC 39475 |||||||||||||||||| | || | || | ||| | | |||||| | || Sbjct 2672 AGAATACATTTCAGAATGAATGTTCTCAACGGCCACTTGCATTCCATAAAAACAACGAGC 2731 Query 39476 TTCTGAATACTGAACTTCGGAAAAGAATCGTTCAAC--TAAATTCTCAGATACAATACCA 39533 || | | ||||||||| | | || ||||| |||||| || || || ||| Sbjct 2732 CTCAGGAACTTGAACTTCGTTACAAAAA--TTCAAGGTTAAATTTTCGTTAACGATGCCA 2789 Query 39534 TCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAA 39593 ||| ||||| ||||| || | |||||| |||||| ||| |||| ||| || | | Sbjct 2790 TCACTCGCTGCAAAGAAGGCCAGAACATACGAAATAAAGTGTCGTTCACCATCATTGAGA 2849 Query 39594 TTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 ||||||||| |||||| || | |||||| || || || | ||||||||||| || Sbjct 2850 TTTTCCCAATCGGTAAGATCCTTCGCTAAATCAACCTCCTCAACCGTCCAAAAAGAAGCG 2909 Query 39654 ACGGATTTTTTATA 39667 || | ||| ||||| Sbjct 2910 ACAGCTTTCTTATA 2923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904795544407800