Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09-
25] 30,091 sequences; 103,664,560 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1613 118 1e-20
seq4589 116 5e-20
>seq1613
Length=8839
Score = 118 bits (130), Expect = 1e-20
Identities = 128/167 (77%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 1592132 TGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190
||||| | |||||| ||||| || || || || || |||||| | ||||| || ||
Sbjct 6780 TGGGATCAAGAGTTTCTGCGA-GTTGATCAAGGGACACTTTTTGAGCTCATCCTTGCGGC 6722
Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250
||| || || ||||| ||| |||||| ||| | || |||||||| |||||||||||
Sbjct 6721 CAATTATCTTGACATAAAGGGTCTGCTTGATACGTGTTGTAAGTCTGTTGCCAACATGAT 6662
Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
|||||||||| | || ||||| || ||||| ||||| ||||| ||||
Sbjct 6661 CAAGGGCAAGACACCTGAGGAAATTCGCAAAACCTTCAACATAAAGT 6615
>seq4589
Length=3505
Score = 116 bits (128), Expect = 5e-20
Identities = 201/283 (71%), Gaps = 13/283 (5%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
||||| ||||||||||||| ||||| || |||| || || |||||||| || ||||||
Sbjct 2403 CCTTCATCGCGACTGATCAGCTCGTTACTGAAGGTAAGACCAGGCATGAGACCACGCTTC 2462
Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AA 869297
||||||||||| || | ||| || || ||||| || | ||||| | || || ||
Sbjct 2463 TTGAGCCAAAAAATAGAAGCA-AACGAACCGGAGAAGAAAACACCCTCAATAGCAGCGAA 2521
Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCG 869354
|||| | | ||||| || || ||| ||||| ||| || ||||||||| | |
Sbjct 2522 AGCC-ACCACACGCTCAGC----GT-ACGATGCCCT-CTTATTCGCGATCCACTTAAGTG 2574
Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 869414
|||| || ||||| || || | |||| ||| | |||||| ||| | ||
Sbjct 2575 CCCAATCCGCCTTCTTAGCGACGCATGGCAGCGTTTGAATGGCGTTAAATAAAAAATCAC 2634
Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457
|| ||||||||||||||||| || |||||||| || |||||
Sbjct 2635 GCTCTGCCGGGTCCTTGACATATGTATCGATCAGAAGAGAATA 2677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6104669791623847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |