Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1613 118 1e-20 seq4589 116 5e-20 >seq1613 Length=8839 Score = 118 bits (130), Expect = 1e-20 Identities = 128/167 (77%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190 ||||| | |||||| ||||| || || || || || |||||| | ||||| || || Sbjct 6780 TGGGATCAAGAGTTTCTGCGA-GTTGATCAAGGGACACTTTTTGAGCTCATCCTTGCGGC 6722 Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||| || || ||||| ||| |||||| ||| | || |||||||| ||||||||||| Sbjct 6721 CAATTATCTTGACATAAAGGGTCTGCTTGATACGTGTTGTAAGTCTGTTGCCAACATGAT 6662 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 |||||||||| | || ||||| || ||||| ||||| ||||| |||| Sbjct 6661 CAAGGGCAAGACACCTGAGGAAATTCGCAAAACCTTCAACATAAAGT 6615 >seq4589 Length=3505 Score = 116 bits (128), Expect = 5e-20 Identities = 201/283 (71%), Gaps = 13/283 (5%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| ||||||||||||| ||||| || |||| || || |||||||| || |||||| Sbjct 2403 CCTTCATCGCGACTGATCAGCTCGTTACTGAAGGTAAGACCAGGCATGAGACCACGCTTC 2462 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AA 869297 ||||||||||| || | ||| || || ||||| || | ||||| | || || || Sbjct 2463 TTGAGCCAAAAAATAGAAGCA-AACGAACCGGAGAAGAAAACACCCTCAATAGCAGCGAA 2521 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCG 869354 |||| | | ||||| || || ||| ||||| ||| || ||||||||| | | Sbjct 2522 AGCC-ACCACACGCTCAGC----GT-ACGATGCCCT-CTTATTCGCGATCCACTTAAGTG 2574 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 869414 |||| || ||||| || || | |||| ||| | |||||| ||| | || Sbjct 2575 CCCAATCCGCCTTCTTAGCGACGCATGGCAGCGTTTGAATGGCGTTAAATAAAAAATCAC 2634 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || ||||||||||||||||| || |||||||| || ||||| Sbjct 2635 GCTCTGCCGGGTCCTTGACATATGTATCGATCAGAAGAGAATA 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104669791623847