Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4589 214 2e-50 seq4951 163 4e-35 >seq4589 Length=3505 Score = 214 bits (236), Expect = 2e-50 Identities = 409/602 (68%), Gaps = 3/602 (0%) Strand=Plus/Plus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 || || || |||| || || ||||| || ||||| ||||| | ||| || | ||| Sbjct 2367 TGCTTGAAAATTAGACACGCAAAGTCGGTGTGAAGGCCTTCATCGCGACTGATCAGCTCG 2426 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 ||| || || || |||||||| ||||||||||| ||||||||||| || | |||||| Sbjct 2427 TTACTGAAGGTAAGACCAGGCATGAGACCACGCTTCTTGAGCCAAAAAATAGAAGCAAAC 2486 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || || || ||||| | || || | || || || || || | | ||| |||| | Sbjct 2487 GAACCGGAGAAGAAAACACCCTCAATAGCAGCGAAAGCCACCACACGCTCAGCGTACGAT 2546 Query 39782 G---TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 | | | ||| |||||||| |||||||||| || ||||| || || |||| Sbjct 2547 GCCCTCTTATTCGCGATCCACTTAAGTGCCCAATCCGCCTTCTTAGCGACGCATGGCAGC 2606 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 |||| || || ||||| | | ||| || | || || ||||||||||| || Sbjct 2607 GTTTGAATGGCGTTAAATAAAAAATCACGCTCTGCCGGGTCCTTGACATATGTATCGATC 2666 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | ||| ||||||||| ||||| ||||| |||| |||| || | ||| |||||||| Sbjct 2667 AGAAGAGAATACATTTCAGAATGAATGTTCTCAACGGCCACTTGCATTCCATAAAAACAA 2726 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | || |||| || ||| || || |||||| | | |||||||| || || || Sbjct 2727 CGAGCCTCAGGAACTTGAACTTCGTTACAAAAATTCAAGGTTAAATTTTCGTTAACGATG 2786 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 |||||||| || ||||| || |||| |||| |||||| | | |||| | | Sbjct 2787 CCATCACTCGCTGCAAAGAAGGCCAGAACATACGAAATAAAGTGTCGTTCACCATCATTG 2846 Query 40079 AATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138 | || | ||| || | | ||| || | || ||| || || ||| | |||||||| || Sbjct 2847 AGATTTTCCCAATCGGTAAGATCCTTCGCTAAATCAACCTCCTCAACCGTCCAAAAAGAA 2906 Query 40139 GCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAAT 40198 || | || || || || | | ||| || ||| ||||||||||||| | | |||||| Sbjct 2907 GCGACAGCTTTCTTATAGAACTCCCAAATGTCATGATATTGTATTGGCATCACGACAAAT 2966 Query 40199 CT 40200 || Sbjct 2967 CT 2968 >seq4951 Length=3275 Score = 163 bits (180), Expect = 4e-35 Identities = 318/467 (68%), Gaps = 2/467 (0%) Strand=Plus/Plus Query 69515 GTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATG 69574 ||||||| || || ||||| |||| | | ||||| ||||||| ||| ||| || | Sbjct 1693 GTTCGAAATCCTCCCCCCAGCAATCAGCAAGACCAGGGCATTCATGGGGATCCATAAAGG 1752 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| | || || | ||| | ||||| || |||||||| |||||||| || | | Sbjct 1753 TCCATGAACCACCAGTTTCAACCCTCTTCATGAACAGATCGGGGATCCAAAGCGCGAGGA 1812 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | |||||||| | | | | || ||| || || || || | || | ||| | || Sbjct 1813 AAAGATCTCTTGCACGAATCTCCTCAGCGCCAGTGTTCTTCCGCAATTCCACAAATTGCA 1872 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 | ||| | ||||||||| || || || | || | | | || |||||||| || || | Sbjct 1873 GTACATCTGGATGCCATGGCTCAAGGTAGACAGCGAAGGCGCCAGGTCGTTTGTTCCCAC 1932 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | || |||| || | |||||| | || |||||| ||||||||| | || |||||| | Sbjct 1933 CTTGGTCTACATAACGAGCAGTGCTGTTGAAGACTCGCAGCATCGGTACAAGACCATTCG 1992 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC-GAATATTACTAATAGATAGA 69873 | | ||||| || || | || ||| | | ||| | | ||||| | || | ||| Sbjct 1993 ACTCCCCATTGGTGCCGGCGATG-AACGTGCCCTTACTCCGAATACAATGAACATTGAGA 2051 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || || || || || |||| ||||| || ||||| |||| | ||||| ||||| ||| Sbjct 2052 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2111 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980 || || || ||||| |||| | | | ||| ||||||||||| || Sbjct 2112 TCAATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTG 2158 Score = 113 bits (124), Expect = 6e-20 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || || || || || |||| ||||| || ||||| |||| | ||||| ||||| ||| Sbjct 2188 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2247 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || || ||||| |||| | | | ||| ||||||||||| || || || Sbjct 2248 TCGATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTGTGCATTAGGCGTC 2307 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || || ||||| | || || || || ||| | ||||| ||| |||| | |||||||| Sbjct 2308 CCAGCGTTAAAGAGCGTTGGTGAGGCATGAATCAACCACTTTCCAGACATTAGATTGTAC 2367 Query 70054 GTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 || ||||| || | || | || | | | ||||| ||||||| ||| ||||| ||||| Sbjct 2368 GTCTCAATGGCAGCATCCACGTCTTCGCCG-TGAATACCTATCGAGACCCGCATAAACAT 2426 Query 70113 ATGCTGAGGTC 70123 | |||||||| Sbjct 2427 GTACTGAGGTC 2437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686650427841240