Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4589 114 2e-20 seq4951 89.7 6e-13 >seq4589 Length=3505 Score = 114 bits (126), Expect = 2e-20 Identities = 182/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 ||| | ||||| ||||| | || || | ||||| ||||||||||| | |||||| Sbjct 2623 TTTAACGCCATTCAAACGCTGCCATGCGTCGCTAAGAAGGCGGATTGGGCACTTAAGTGG 2564 Query 94777 TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGT 94836 | | | ||| | || | |||||||| | | || || || | |||||||| Sbjct 2563 ATCGCGAATAAGAGGGCATCGTACGCTGAGCGTGTGGTGGCTTTCGCTGCTATTGAGGGT 2504 Query 94837 ATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 94895 | |||||||| ||||| || ||| |||||| ||||||||||||||| ||||||||||| Sbjct 2503 GTTTTCTTCTCCGGTTCGTT-TGCTTCTATTTTTTGGCTCAAGAAGCGTGGTCTCATGCC 2445 Query 94896 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| |||| |||||||| ||| ||| || || || || ||| || ||||| Sbjct 2444 TGGTCTTACCTTCAGTAACGAGCTGATCAGTCGCGATGAAGGCCTTCACACCGACTTTGC 2385 Query 94956 G-GTGGAACTTTTCAA 94970 | || || ||||||| Sbjct 2384 GTGTCTAA-TTTTCAA 2370 >seq4951 Length=3275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||||||||||| ||||| || | || |||||||| || |||||| | ||| ||| | Sbjct 2435 CCTCAGTACATGTTTATGCGGGTCTCGATAGGTATTCACGGCGAAGACGTGGATGCTGCC 2376 Query 104282 TTGGAGACATACGACAAGATGTC-CCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| | ||||| || || ||| ||||| || ||||||| ||||| Sbjct 2375 ATTGAGACGTACAATCTAATGTCTGGAAAGT-GGTTGATTCATGCCTCACCAACGCTCTT 2317 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || ||||| || || | | || ||||| || ||||| | || | | ||||| || Sbjct 2316 TAACGCTGGGACGCCTAATGCACAGATGTCTAGCTGCTTTTTGGTCACGATGAAGGATGA 2257 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTC--AAAGTG-GGC 104457 | ||| | || || || | || || | ||||||| | ||||| |||||| || Sbjct 2256 CAGTATCGAGGGCATATACGACACGCTCAAACAGTGTGCCCTTATCTCCAAAAGTGCGGG 2197 Query 104458 TGGG 104461 |||| Sbjct 2196 TGGG 2193 Score = 86.0 bits (94), Expect = 7e-12 Identities = 233/348 (67%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || ||||| | || ||||| || | || ||||| || || || ||| ||| || Sbjct 2008 GGCACCAATGGGGAGTCGAATGGTCTTGTACCGATGCTGCGAGTCTTCAACAGCACTGCT 1949 Query 104573 CGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || |||||| | |||| |||| ||| || | |||| ||||| ||||||||| Sbjct 1948 CGTTATGTAGACCAAGGTGGGAACAAACGACCTGGCGCCTTCGCTGTCTACCTTGAGCCA 1889 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 ||||| | ||| | || | || | || ||||| ||| || | |||||| Sbjct 1888 TGGCATCCAGATGTACTGCAATTTGTGGAATTGCGGAAGAACACTGGCGCTGAGGAGATT 1829 Query 104690 CGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 || ||| | ||||| ||| ||| || ||||| || ||||| ||||||||||| ||||| Sbjct 1828 CG-TGCAAGAGATCTTTTCCTCGCGCTTTGGATCCCCGATCTGTTCATGAAGAGGGTTGA 1770 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTG-TCCAGA-CAAGGCACCTGGTCTCTCCGATGCC 104806 |||| ||| | || | | | ||| | || || |||||||| | ||| | Sbjct 1769 AACTGGTGGTTCATGGAC-CTTTATGGATCCCCATGAATGC-CCTGGTCTTGCTGATTGC 1712 Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGT 104854 ||| ||||| || ||| |||||| | |||||||| ||||||| Sbjct 1711 TGGGGGGAGGATTTCGAACAACTTTACTCGAAGTACGAATCAGAAGGT 1664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583041413740840