Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4951 129 6e-25 seq4589 122 1e-22 >seq4951 Length=3275 Score = 129 bits (142), Expect = 6e-25 Identities = 295/439 (67%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303 |||||||| ||||| || | || | |||||||||||||| ||||||||||| ||||| Sbjct 2158 CAGATGTCTAGCTGCTTTTTGGTCACGATGAAGGATGACAGTATTGAGGGCATATACGAC 2099 Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTC- 19362 |||||||| |||| || | |||||||| | | || || ||||| | || || || Sbjct 2098 ACGCTCAAACAGTGTGCCCTTATCTCCAAAAGTGCGGGTGGGATCGGTCT-CAATGTTCA 2040 Query 19363 GAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCG-ACGGTATCG 19421 ||| ||| | || || ||| || || || || | || || | ||| | | Sbjct 2039 TTGTATTCGGAGTAAGGGCACGTTCATCGCCGGCACCAATGG-GGAGTCGAATGGTCTTG 1981 Query 19422 TCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAAC 19481 | || ||||| || |||||||||| ||| || | || || |||| || || ||||| Sbjct 1980 TACCGATGCTGCGAGTCTTCAACAGCACTGCTCGTTATGTAGACCAAGGTGGGAACAAAC 1921 Query 19482 GCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCG 19541 | ||| | ||||| ||||||| ||||||||||| | || || || | || | | Sbjct 1920 GACCTGGCGCCTTCGCTGTCTACCTTGAGCCATGGCATCCAGATGTACTGCAATTTGTGG 1861 Query 19542 AACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGT 19601 || |||| |||| || | |||||||| || | || || ||| || | | Sbjct 1860 AATTGCGGAAGAACACTGGCGCTGAGGAGATTCGTGCAAGAGATCTTTTCCTCGCGCTTT 1801 Query 19602 GGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCC 19661 |||| || || || |||||| ||| |||||| | | | |||| | | ||| | Sbjct 1800 GGATCCCCGATCTGTTCATGAAGAGGGTTGAAACTGGTGGTTCATGGACCTTTATGGATC 1741 Query 19662 CGCACGAATGCCCTGGCCT 19680 | || ||||||||||| || Sbjct 1740 CCCATGAATGCCCTGGTCT 1722 Score = 125 bits (138), Expect = 8e-24 Identities = 180/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||| || || | | |||||||| | || |||| |||||||| ||||| |||||| Sbjct 2188 CCGATCCCACCCGCACTTTTGGAGATAAGGGCACACTGTTTGAGCGTGTCGTATATGCCC 2247 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 ||||| ||| |||||||| | ||||| |||||||| |||||||||| || ||| Sbjct 2248 TCGATACTGTCATCCTTCATCGTGACCAAAAAGCAGCTAGACATCTGTGCATTAGGCGTC 2307 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 || ||||| ||||| || || | || || | || ||||| ||| |||| |||| Sbjct 2308 CCAGCGTTAAAGAGCGTTGGTGAGGCATGAATCAACCACTTTCCAGACATTAGATTGTAC 2367 Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893 ||||| || | | ||| |||||||| || || | || ||| ||||| || | | Sbjct 2368 GTCTCAATGGCAGCATCCACGTCTTCGCCGTGAATACCTATCGAGACCCGCATAAACATG 2427 Query 79894 TACTGGGGCGTCTC 79907 ||||| || |||| Sbjct 2428 TACTGAGGTCTCTC 2441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/258 (68%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| ||||||||| | || ||||| ||| || | || || || ||||| ||| | Sbjct 2441 GAGAGACCTCAGTACATGTTTATGCGGGTCTCGATAGGTATTCACGGCGAAGACGTG--- 2385 Query 19157 CGAGTCCGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCC 19212 || | || ||||| ||| | || ||| |||| || | || || | || Sbjct 2384 -GATGCTGCCATTGAGACGTACAATCTAATGTCTGGAAAGTGGTTGATTCATGCCTCACC 2326 Query 19213 GACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTAT 19272 || || || ||||| || ||| || | |||||||| ||||| || | || | || Sbjct 2325 AACGCTCTTTAACGCTGGGACGCCTAATGCACAGATGTCTAGCTGCTTTTTGGTCACGAT 2266 Query 19273 GAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAA 19332 |||||||||||| || |||||||| ||||| |||||||| |||| || | |||||||| Sbjct 2265 GAAGGATGACAGTATCGAGGGCATATACGACACGCTCAAACAGTGTGCCCTTATCTCCAA 2206 Query 19333 GTGGTCCGGGGGTATCGG 19350 | | || || ||||| Sbjct 2205 AAGTGCGGGTGGGATCGG 2188 >seq4589 Length=3505 Score = 122 bits (134), Expect = 1e-22 Identities = 353/534 (66%), Gaps = 17/534 (3%) Strand=Plus/Minus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 ||||||||||| ||| ||| || ||| | || |||||| |||| | || || || Sbjct 2923 TATAAGAAAGCTGTCGCTTCTTTTTGGACGGTTGAGGAGGTTGATTTAGCGAAGGATCTT 2864 Query 59655 AAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTC 59714 | |||||||| || |||||| | | || | || || || | || ||||||||| Sbjct 2863 ACCGATTGGGAAAATCTCAATGATGGTGAACGACACTTTATTTCGTATGTTCTGGCCTTC 2804 Query 59715 TTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTC 59774 || || ||||||||||| || || | |||||| || | |||| |||| || || || Sbjct 2803 TTTGCAGCGAGTGATGGCATCGTTAACGAAAATTTAACCTTGAATTTTTGTAACGAAGTT 2744 Query 59775 CAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT-CA----GTCGTTCAACGAGTCTATCC 59829 || || | ||||| || | || || | | || || | |||| ||| || | Sbjct 2743 CAAGTTCCTGAGGCTCGTTGTTTTTATG-GAATGCAAGTGGCCGTT----GAGAACATTC 2689 Query 59830 ACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTG 59889 | || || | ||| || || ||||||||| | |||||||| |||| |||| | | Sbjct 2688 ATTCTGAAATGTATTCTCTTCTGATCGATACATATGTCAAGGACCCGGCAGAGCGTGATT 2629 Query 59890 GTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 | | || ||||| | ||| | || || || | || || || ||||| | Sbjct 2628 TTTTATTTAACGCCATTCAAACGCTGCCATGC-GTCGCTAAGAAGGCGGATTGGGCACTT 2570 Query 59949 CAGTGGAT---GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GT 60004 ||||||| || | | ||||| | || | ||| | | ||||| || ||| | Sbjct 2569 AAGTGGATCGCGAATAAGAGGGCATCGTACGCTGAGCGTGTGGTGGCTTTCGC-TGCTAT 2511 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || | |||||||| || ||||| | ||||||| |||||||| |||||||| || Sbjct 2510 TGAGGGTGTTTTCTTCTCCGGTTCGTTTGCTTCTATTTTTTGGCTCAAGAAGCGTGGTCT 2451 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||| || || | ||| ||||||||||| || || || ||||| || Sbjct 2450 CATGCCTGGTCTTACCTTCAGTAACGAGCTGATCAGTCGCGATGAAGGCCTTCA 2397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548318479253040