Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq210 163 2e-35 seq30086 156 4e-33 seq10174 152 4e-32 seq2251 141 8e-29 seq5363 82.4 7e-11 >seq210 Length=64943 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || |||||| | ||||| || || ||||| ||| Sbjct 42172 ATGCAAATCTTCGTCAAAACTCTTACTGGCAAGACGATTACCCTGGAGGTGGAGCCGAGT 42231 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| |||| || || || ||||| ||||| || ||||| ||||| || ||| Sbjct 42232 GATTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAA 42291 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || ||||| ||||| ||| || || | || || |||||| Sbjct 42292 CAACGTCTCATCTTTGCTGGTAAACAGTTGGAGGACGGTCGCACTCTGTCGGACTACAAC 42351 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | |||||||| |||||||||| |||||||| Sbjct 42352 ATTCAAAAGGAGTCAACCCTTCATTTGGTGCTGCGTTTGCGAGGTGGCAT 42401 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || |||| |||||| | ||||| | || ||||| || Sbjct 30827 CATGCAAATATTTGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAG 30768 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || || |||||||| || ||||| ||||| || || Sbjct 30767 TGACTCGATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCA 30708 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||||||| | |||||| || || |||||||| | ||| | || || ||||| Sbjct 30707 ACAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGACGCACCTTGTCTGACTACAA 30648 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| || |||||||| | || | || |||||||| Sbjct 30647 TATACAAAAGGAGTCGACTTTGCATTTGGTGCTTCGACTTCGTGGTGGCAT 30597 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || || ||| |||||||||| ||||| || || Sbjct 31055 CATGCAAATCTTTGTGAAGACGCTAACGGGGAAGACTATTACTCTGGAAGTTGAGCCCAG 30996 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || || ||||||| || || || ||||||||||| || ||||| || || ||||| Sbjct 30995 TGATTCCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATCCCGCCGGATCA 30936 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||||| | |||||| || || |||||||| || || | ||||| ||||| Sbjct 30935 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 30876 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| |||||| | |||||||| | || | || |||||||| Sbjct 30875 TATACAAAAGGAATCGACCCTTCATTTGGTGCTTCGACTTCGTGGTGGCAT 30825 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || || || |||||| | ||||| || || ||||| || Sbjct 39709 CATGCAAATATTTGTGAAGACGCTAACTGGCAAGACAATTACACTGGAGGTGGAGCCCAG 39768 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || || ||||||| || || || ||||||||||| || ||||| || || ||||| Sbjct 39769 TGATTCCATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATCCCGCCGGATCA 39828 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||||| | |||||| || || |||||||| || || | ||||| ||||| Sbjct 39829 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 39888 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| |||||| | |||||||| | || | || |||||||| Sbjct 39889 TATACAAAAGGAATCGACCCTTCATTTGGTGCTTCGACTTCGTGGTGGCAT 39939 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || |||| |||||| | ||||| | || ||||| || Sbjct 39937 CATGCAAATATTTGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAG 39996 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || || |||||||| || ||||| ||||| || || Sbjct 39997 TGACTCGATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCA 40056 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||||||| | |||||| || || |||||||| | ||| | || || ||||| Sbjct 40057 ACAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGACGCACCTTGTCTGACTACAA 40116 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| || |||||||| | || | || |||||||| Sbjct 40117 TATACAAAAGGAGTCGACTTTGCATTTGGTGCTTCGACTTCGTGGTGGCAT 40167 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || ||||| |||||| | ||||| | || ||||| || Sbjct 39481 CATGCAAATATTTGTGAAGACGCTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAG 39540 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || ||||| |||||||| || ||||| ||||| || || Sbjct 39541 TGACTCGATAGAGAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATTCCACCGGACCA 39600 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| |||| || || || || |||||||| || || | ||||| ||||| Sbjct 39601 GCAGCGTTTGATATTTGCGGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 39660 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| | |||||||| | || | || |||||||| Sbjct 39661 TATACAAAAGGAGTCGACTCTTCATTTGGTGCTCCGACTTCGTGGTGGCAT 39711 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| |||||| ||||||| | || ||||| || Sbjct 39254 ATGCAAATCTTTGTGAAAACGTTGACGGGCAAGACTATTACATTGGAGGTGGAGCCAAGT 39313 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || || || |||||||| || ||||| ||||| || ||| Sbjct 39314 GACTCGATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCAA 39373 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||||||| || || | || || |||||| Sbjct 39374 CAGCGTTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACTCTGTCTGACTACAAC 39433 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || || |||||||| | || | || |||||||| Sbjct 39434 ATTCAAAAAGAGTCAACTTTGCATTTGGTGCTTCGACTTCGTGGTGGCAT 39483 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || || || || ||| ||||||| | || ||||| ||| Sbjct 30599 CATGCAAATATTTGTGAAGACGCTTACGGGGAAGACTATTACCTTGGAGGTGGAGCCGAG 30540 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || ||||||||||| || ||||| ||||| || || Sbjct 30539 TGACTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCA 30480 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| |||| || || || || ||||||| || || | || || ||||| Sbjct 30479 GCAGCGTTTGATATTTGCGGGTAAGCAGCTGGAAGATGGTCGCACTCTGTCTGACTACAA 30420 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||||||||||||||| || Sbjct 30419 CATTCAAAAGGAGTCAAC 30402 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || || || || ||| ||||||| | || ||||| ||| Sbjct 40165 CATGCAAATATTTGTGAAGACGCTTACGGGGAAGACTATTACCTTGGAGGTGGAGCCGAG 40224 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || ||||||||||| || ||||| ||||| || || Sbjct 40225 TGACTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCA 40284 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||||||||||| | |||||| || || |||||||| Sbjct 40285 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGA 40320 >seq30086 Length=500 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || |||| |||||| | ||||| | || ||||| || Sbjct 357 CATGCAAATATTTGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAG 298 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || || |||||||| || ||||| ||||| || || Sbjct 297 TGACTCGATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCGGACCA 238 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||||||| | |||||| || || |||||||| | ||| | || || ||||| Sbjct 237 ACAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGACGCACCTTGTCTGACTACAA 178 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| || |||||||| | || | || |||||||| Sbjct 177 TATACAAAAGGAGTCGACTTTGCATTTGGTGCTTCGACTTCGTGGTGGCAT 127 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||||||||| || ||||| || || ||||| ||||||||||| | |||||| || Sbjct 500 AAGATTCAAGACAAGGAGGGCATCCCGCCGGATCAGCAGCGTTTAATCTTCGCCGGTAAG 441 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || |||||||| || || | ||||| ||||| || |||||||| |||||| | ||| Sbjct 440 CAGTTGGAAGATGGTCGCACTCTGTCCGACTACAATATACAAAAGGAATCGACCCTTCAT 381 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | || | || |||||||| Sbjct 380 TTGGTGCTTCGACTTCGTGGTGGCAT 355 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || || || || || ||| ||||||| | || ||||| ||| Sbjct 129 CATGCAAATATTTGTGAAGACGCTTACGGGGAAGACTATTACCTTGGAGGTGGAGCCGAG 70 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| || || || ||||||||||| || ||||| ||||| || || Sbjct 69 TGACTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCA 10 Query 27107 ACAGCGTTT 27115 |||||||| Sbjct 9 GCAGCGTTT 1 >seq10174 Length=1708 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||||||| | || || ||||| || ||||| || Sbjct 1267 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAACCTTCT 1208 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||||| || || ||||||||||||||| || || || || || || || Sbjct 1207 GACTCTATTGAGAATGTGAAGGCAAAAATTCAAGACAAGGAGGGTATCCCTCCGGACCAG 1148 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| ||||| ||||| | | || | ||||| ||||| Sbjct 1147 CAGCGTCTTATTTTTGCTGGCAAGCAATTAGAAGATGGGCGGTCCTTGTCCGACTACAAT 1088 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | ||| | || | ||| | || ||||| Sbjct 1087 ATTCAGAAGGAGTCAACGCTTCATCTTGTGCTTCGTCTTCGTGGTGG 1041 >seq2251 Length=6394 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | || |||||||| || || || | Sbjct 1004 ATGCAAATTTTTGTTAAAACCCTTACTGGGAAAACCATCACTCTTGAGGTTGAGCCTAGC 1063 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||||| |||||| |||||||||||||| || ||||||||||| || || Sbjct 1064 GACTCTATTGAGAACGTCAAAGCGAAAATTCAAGACAAGGAGGGCATACCACCAGACCAG 1123 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||||| || ||||| || | || | ||||| |||||| Sbjct 1124 CAACGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGGCGAACTCTCTCCGACTACAAC 1183 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||||||||| ||||| | ||| | |||||| Sbjct 1184 ATTCAAAAGGAATCGACGCTCCATCTTGTTTTG 1216 >seq5363 Length=3071 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||||| || ||||| || || || || |||||||||||||||||| |||| ||| Sbjct 2419 TGGAACGCAGCTCAACGCCAACTGCTTCGTGAGGGCAAAATGCACGGATTTTTGCGAATG 2360 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCA 135568 |||||||| ||||| || | |||||| |||| Sbjct 2359 TATTGGGCCAAAAAAATCCTCGAATGGCATGCA 2327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434754810880320