Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq30086 123 6e-23 seq210 123 6e-23 >seq30086 Length=500 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || | || | ||| ||||| ||||| || || || || | | ||| Sbjct 135 ACGAAGTCGAAGCACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGT 194 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||| || |||||||| | || |||||||| || |||| || Sbjct 195 GCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCC 254 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||| |||||||| ||||| || || || | |||| ||| || ||||| Sbjct 255 CTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATCGAGTCA---CTTGGCTCCACCTC 311 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || |||||||| || || | ||||| ||||| | ||||| Sbjct 312 CAAGGTAATCGTCTTGCCAGTCAACGTCTTCACAAATATTTGCAT 356 >seq210 Length=64943 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || | || | ||| ||||| ||||| || || || || | | ||| Sbjct 30605 ACGAAGTCGAAGCACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGT 30664 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||| || |||||||| | || |||||||| || |||| || Sbjct 30665 GCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCC 30724 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||| |||||||| ||||| || || || | |||| ||| || ||||| Sbjct 30725 CTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATCGAGTCA---CTTGGCTCCACCTC 30781 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || |||||||| || || | ||||| ||||| | ||||| Sbjct 30782 CAAGGTAATCGTCTTGCCAGTCAACGTCTTCACAAATATTTGCAT 30826 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || | || | ||| ||||||||||| ||||| || || | || || Sbjct 39475 ACGAAGTCGAAGCACCAAATGCAAAGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGT 39416 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| ||||| ||||| | || |||||||| || |||| || Sbjct 39415 ACGACCATCTTCCAACTGCTTTCCTGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCC 39356 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||| |||||||| ||||| || || || | |||| ||| || ||||| Sbjct 39355 CTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATCGAGTCA---CTTGGCTCCACCTC 39299 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| ||||| | || || ||||| | ||||| Sbjct 39298 CAATGTAATAGTCTTGCCCGTCAACGTTTTCACAAAGATTTGCAT 39254 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || | || | ||| ||||| ||||| || || || || | | ||| Sbjct 40159 ACGAAGTCGAAGCACCAAATGCAAAGTCGACTCCTTTTGTATATTGTAGTCAGACAAGGT 40100 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||| || |||||||| | || |||||||| || |||| || Sbjct 40099 GCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGTTGGTCCGGTGGAATGCC 40040 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||| |||||||| ||||| || || || | |||| ||| || ||||| Sbjct 40039 CTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATCGAGTCA---CTTGGCTCCACCTC 39983 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || |||||||| || || | ||||| ||||| | ||||| Sbjct 39982 CAAGGTAATCGTCTTGCCAGTCAACGTCTTCACAAATATTTGCAT 39938 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || ||||| ||||| ||||| ||||| || || | || || Sbjct 30377 ACGAAGACGAAGCACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGT 30436 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || || || || | || || ||||| || |||| || Sbjct 30437 GCGACCATCTTCCAGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCC 30496 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| ||||| || || || | |||| || ||||| | Sbjct 30497 CTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAA 30556 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || ||||| ||||| | ||||| Sbjct 30557 GGTAATAGTCTTCCCCGTAAGCGTCTTCACAAATATTTGCAT 30598 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||| ||||| || |||| || || | || || |||| ||| Sbjct 42374 TGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGACAGAGTGCGACCGTCCTCCAACTGT 42315 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || ||||||||||| || |||| || ||||||||||| ||||| Sbjct 42314 TTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTC 42255 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || || || | ||| || ||||| || || |||||||| || || Sbjct 42254 GCCTTCACATTCTCTATCGAATCACTCGGCTCCACCTCCAGGGTAATCGTCTTGCCAGTA 42195 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | ||||| Sbjct 42194 AGAGTTTTGACGAAGATTTGCAT 42172 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||| |||||| || |||||||| | || || ||||| || |||| Sbjct 40330 GGTGCGTCCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGGTCCGGTGGAAT 40271 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || ||||| ||||| || || || | |||| || ||||| Sbjct 40270 GCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTC 40211 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| ||||| || ||||| ||||| | ||||| Sbjct 40210 CAAGGTAATAGTCTTCCCCGTAAGCGTCTTCACAAATATTTGCAT 40166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158705099451215