Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq210 113 4e-20 seq2251 104 2e-17 >seq210 Length=64943 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| ||||||||||| || |||| || || || | || || Sbjct 39691 CACCAAATGAAGAGTCGACTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 39632 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || ||||||||||| | |||||||||||| | || | || ||| ||||| Sbjct 39631 CAACTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 39572 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||||| || | || | | || || || | |||||| |||| || || | || Sbjct 39571 GATTTTCGCCTTCACATTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTAATCGTCTT 39512 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || ||||| |||||||| Sbjct 39511 GCCAGTCAGCGTCTTCACAAATATTTGCAT 39482 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| |||| || || | ||||||||| || || ||| ||||| || || || || Sbjct 42402 CATGCCACCTCGCAAACGCAGCACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTC 42343 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || |||| || | |||||| || ||||| || ||||| || ||||| | Sbjct 42342 CGACAGAGTGCGACCGTCCTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGGTCCGG 42283 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| || ||| || | || | | || ||| |||| ||| Sbjct 42282 TGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAATCACTCGGCTC 42223 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||| |||| || || | || || || || ||||| || |||||||||||| Sbjct 42222 CACCTCCAGGGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAGATTTGCATC 42171 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| | || ||||||||| || || || || | || || || | || || Sbjct 39463 CACCAAATGCAAAGTTGACTCTTTTTGAATGTTGTAGTCAGACAGAGTACGACCATCTTC 39404 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || ||||| || | |||||| ||||| | || | || ||| ||||| Sbjct 39403 CAACTGCTTTCCTGCAAAGATCAAACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCTTG 39344 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | || | | || || || | |||||| |||| || ||| | || Sbjct 39343 GATCTTCGCCTTCACATTCTCAATCGAGTCACTTGGCTCCACCTCCAATGTAATAGTCTT 39284 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||||| |||||| ||||||||||||||| Sbjct 39283 GCCCGTCAACGTTTTCACAAAGATTTGCATC 39253 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| ||||| || || || || | || || || | || || Sbjct 30389 CACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGTGCGACCATCTTC 30448 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || ||||||||||| | |||||||||||| | || | || ||| ||||| Sbjct 30449 CAGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 30508 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||| || | || | | || || |||| |||||| |||| || ||| | || Sbjct 30509 AATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTAATAGTCTT 30568 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| ||||| || ||||| |||||||| Sbjct 30569 CCCCGTAAGCGTCTTCACAAATATTTGCAT 30598 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || || ||||||||||| || |||| || || || | || || Sbjct 30845 CACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGACCATCTTC 30904 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || || || || | ||||||||| || | || | || ||| ||||| Sbjct 30905 CAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCTTG 30964 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || || | || | | | ||| || | ||| || |||| || ||| | || Sbjct 30965 AATCTTAGCCTTTACATTCTCAATGGAATCACTGGGCTCAACTTCCAGAGTAATAGTCTT 31024 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| ||||| || |||||||||||||| Sbjct 31025 CCCCGTTAGCGTCTTCACAAAGATTTGCAT 31054 >seq2251 Length=6394 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| || | || || | ||| ||||| || ||||| || || || |||| Sbjct 1230 CCTCCTCGTAGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAG 1171 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || | ||| ||||| ||||| ||||| || |||||||| | || Sbjct 1170 AGAGTTCGCCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGGTGGT 1111 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| ||||| |||||| ||||| || | | | ||||| | ||| || Sbjct 1110 ATGCCCTCCTTGTCTTGAATTTTCGCTTTGACGTTCTCAATAGAGTCGCTAGGCTCAACC 1051 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | ||||| |||| || || || ||||||||||| |||||||| || Sbjct 1050 TCAAGAGTGATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCATTTT 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429388070997083