Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2251 131 1e-25 seq210 102 6e-17 seq10174 98.7 7e-16 seq30086 84.2 1e-11 >seq2251 Length=6394 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||||||||| ||||| ||||||||||| || || ||||| |||||||| || ||||| | Sbjct 1000 TAAAATGCAAATTTTTGTTAAAACCCTTACTGGGAAAACCATCACTCTTGAGGTTGAGCC 1059 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||| || |||| | | ||| |||||| ||||| || || |||| ||||| Sbjct 1060 TAGCGACTCTATTGAGAACGTCAAAGCGAAAATTCAAGACAAGGAGGGCATACCACCAGA 1119 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || || | || ||||||||||| || |||| || | || ||| | ||| || Sbjct 1120 CCAGCAACGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGGCGAACTCTCTCCGACTA 1179 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| ||||| || || || | ||| | ||||| || | ||||||||| Sbjct 1180 CAACATTCAAAAGGAATCGACGCTCCATCTTGTTTTGAGACTACGAGGAGGA 1231 >seq210 Length=64943 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || ||||| || || || ||||| |||||||| ||| Sbjct 31054 ATGCAAATCTTTGTGAAGACGCTAACGGGGAAGACTATTACTCTGGAAGTTGAGCCCAGT 30995 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | |||| || ||| ||||| || || | ||||| ||||| Sbjct 30994 GATTCCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATCCCGCCGGATCAG 30935 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| || ||||| || || ||||||| | |||||| | ||| ||||| Sbjct 30934 CAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAT 30875 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| || || || | ||||| || Sbjct 30874 ATACAAAAGGAATCGACCCTTCATTTGGT 30846 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || || | || || || |||||||||||||| || ||||| || || ||||| Sbjct 30733 GACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAA 30674 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | |||||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 30673 GATGGACGCACCTTGTCTGACTACAATATACAAAAGGAGTCGACTTTGCATTTGGT 30618 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || || || || || || || || ||| Sbjct 39710 ATGCAAATATTTGTGAAGACGCTAACTGGCAAGACAATTACACTGGAGGTGGAGCCCAGT 39769 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||| ||| | || | || | || ||||| || || | ||||| ||||| Sbjct 39770 GATTCCATTGAGAATGTGAAGGCGAAGA-TTCAAGACAAGGAGGGCATCCCGCCGGATCA 39828 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||||| || ||||| || || ||||||| | |||||| | ||| ||||| Sbjct 39829 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 39888 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| || || || | ||||| || Sbjct 39889 TATACAAAAGGAATCGACCCTTCATTTGGT 39918 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || || | || || || |||||||||||||| || ||||| || || ||||| Sbjct 40031 GACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAA 40090 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | |||||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 40091 GATGGACGCACCTTGTCTGACTACAATATACAAAAGGAGTCGACTTTGCATTTGGT 40146 >seq10174 Length=1708 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| || || || ||||| || || ||||| | | Sbjct 1267 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAACCTTCT 1208 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| ||| | || | ||||||| ||||| || ||| | || || || || Sbjct 1207 GACTCTATTGAGAATGTGAAGGC-AAAAATTCAAGACAAGGAGGGTATCCCTCCGGACCA 1149 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| ||| | ||||| | || | || ||| ||||| Sbjct 1148 GCAGCGTCTTATTTTTGCTGGCAAGCAATTAGAAGATGGGCGGTCCTTGTCCGACTACAA 1089 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1088 TATTCAGAAGGAGTCAAC 1071 >seq30086 Length=500 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || || | || || || |||||||||||||| || ||||| || || ||||| Sbjct 263 GACAAGGAGGGCATTCCACCGGACCAACAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAA 204 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | |||||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 203 GATGGACGCACCTTGTCTGACTACAATATACAAAAGGAGTCGACTTTGCATTTGGT 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337885640366228