Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10174 125 2e-23 seq2251 116 9e-21 seq210 116 9e-21 >seq10174 Length=1708 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || ||||| || || || ||||| |||| || | | ||||||| Sbjct 1056 AGCACAAGATGAAGCGTTGACTCCTTCTGAATATTGTAGTCGGACAAGGACCGCCCATCT 1115 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || || || ||||| | ||||||||||| | ||| || ||||| ||| Sbjct 1116 TCTAATTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCT 1175 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| || ||| |||| | ||| ||| || || ||||| || || || Sbjct 1176 TGAATTTTTGCCTTCACATTCTCAATAGAGTCAGAAGGTTCAACCTCAAGGGTGATGGTC 1235 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || || || | |||||| Sbjct 1236 TTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 1267 >seq2251 Length=6394 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||| || || || || ||||| |||||||| |||| | ||||| | Sbjct 1221 AGTCTCAAAACAAGATGGAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCGC 1162 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || | || ||||| |||||||| | |||||||| | | || || ||| Sbjct 1161 CCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGTTGCTGGTCTGGTGGTATGCCCTCC 1102 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| |||||| |||| | ||| | ||| || |||||||| Sbjct 1101 TTGTCTTGAATTTTCGCTTTGACGTTCTCAATAGAGTCGCTAGGCTCAACCTCAAGAGTG 1042 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || ||||| || || || || || || || | ||||||||| Sbjct 1041 ATGGTTTTCCCAGTAAGGGTTTTAACAAAAATTTGCATTTTA 1000 >seq210 Length=64943 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || | |||||| || || || ||||| || ||||| |||| | ||| | Sbjct 30837 AGTCGAAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGA 30896 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || ||||||||||| | | |||||| |||| || ||| || ||| Sbjct 30897 CCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCC 30956 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || |||||||| || || ||| |||| | | || ||| ||| ||||| ||| Sbjct 30957 TTGTCTTGAATCTTAGCCTTTACATTCTCAATGGAATC---ACTGGGCTCAACTTCCAGA 31013 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| || |||||||| |||| ||||| Sbjct 31014 GTAATAGTCTTCCCCGTTAGCGTCTTCACAAAGATTTGCAT 31054 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| ||||| |||||||| || | | ||| | |||||| Sbjct 30387 AGCACAAGATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCAGACAGAGTGCGACCATCT 30446 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || | | ||||||||||| | || || ||||| ||| Sbjct 30447 TCCAGCTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCT 30506 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || || ||| |||||| ||| ||| ||| || || | |||||| Sbjct 30507 TGAATCTTCGCCTTCACATTCTCTATCGAGTC---ACTCGGCTCCACCTCCAAGGTAATA 30563 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || |||||||| || | ||||| Sbjct 30564 GTCTTCCCCGTAAGCGTCTTCACAAATATTTGCAT 30598 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || | |||||| || || || ||||| || ||||| |||| | ||| | Sbjct 39927 AGTCGAAGCACCAAATGAAGGGTCGATTCCTTTTGTATATTGTAGTCGGACAGAGTGCGA 39868 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || ||||||||||| | | |||||| |||| || ||| || ||| Sbjct 39867 CCATCTTCCAACTGCTTACCGGCGAAGATTAAACGCTGCTGATCCGGCGGGATGCCCTCC 39808 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || |||||||| || || ||| |||| | | || ||| ||| || || || Sbjct 39807 TTGTCTTGAATCTTCGCCTTCACATTCTCAATGGAATC---ACTGGGCTCCACCTCCAGT 39751 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || || |||||||| || | ||||| Sbjct 39750 GTAATTGTCTTGCCAGTTAGCGTCTTCACAAATATTTGCAT 39710 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || | ||||||||| ||||| ||||| || ||||| |||| | ||| | Sbjct 39699 AGTCGGAGCACCAAATGAAGAGTCGACTCCTTTTGTATATTGTAGTCGGACAGAGTGCGA 39640 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || || || || || | | ||||||||||| | || || ||| Sbjct 39639 CCATCTTCCAACTGCTTACCCGCAAATATCAAACGCTGCTGGTCCGGTGGAATGCCCTCC 39580 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || ||||| ||||| || ||| |||||| ||| ||| ||| || || | Sbjct 39579 TTGTCTTGGATTTTCGCCTTCACATTCTCTATCGAGTC---ACTTGGCTCCACCTCCAAG 39523 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || || |||||||| || | ||||| Sbjct 39522 GTAATCGTCTTGCCAGTCAGCGTCTTCACAAATATTTGCAT 39482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153375954847061