Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq210 102 7e-17 seq2251 95.1 1e-14 seq10174 86.0 5e-12 >seq210 Length=64943 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || ||| | || || || || ||||| ||||| || ||||| Sbjct 31054 ATGCAAATCTTTGTGAAGACGCTAACGGGGAAGACTATTACTCTGGAAGTTGAGCCCAGT 30995 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111218 ||||| ||| | ||||| || ||| ||||| || ||| | |||| || |||| Sbjct 30994 GATTCCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCAT-CCCGCCGGATCA 30936 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | || || || || ||||||||| | ||| || |||| || || Sbjct 30935 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 30876 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||||||| ||||| || || ||||| ||| | || || || ||||||| Sbjct 30875 TATACAAAAGGAATCGACCCTTCATTTGGTGCTTCGACTTCGTGGTGGCA 30826 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || ||| | || ||||| || ||||| |||| ||| ||||| Sbjct 39710 ATGCAAATATTTGTGAAGACGCTAACTGGCAAGACAATTACACTGGAGGTGGAGCCCAGT 39769 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111218 ||||| ||| | || || || ||| ||||| || ||| | |||| || |||| Sbjct 39770 GATTCCATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCAT-CCCGCCGGATCA 39828 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | || || || || ||||||||| | ||| || |||| || || Sbjct 39829 GCAGCGTTTAATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAA 39888 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||||||| ||||| || || ||||| ||| | || || || ||||||| Sbjct 39889 TATACAAAAGGAATCGACCCTTCATTTGGTGCTTCGACTTCGTGGTGGCA 39938 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || ||| |||| ||||| || |||||| |||| ||| || || Sbjct 39482 ATGCAAATATTTGTGAAGACGCTGACTGGCAAGACGATTACCTTGGAGGTGGAGCCAAGT 39541 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | || || ||||| ||||| || ||| |||| || || Sbjct 39542 GACTCGATAGAGAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATTCCACCGGACCAG 39601 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | |||||| || || ||||||||| | ||| || |||| || ||| Sbjct 39602 CAGCGTTTGATATTTGCGGGTAAGCAGTTGGAAGATGGTCGCACTCTGTCCGACTACAAT 39661 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||||||| || || || || ||||| ||| | || || || ||||||| Sbjct 39662 ATACAAAAGGAGTCGACTCTTCATTTGGTGCTCCGACTTCGTGGTGGCA 39710 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 111092 GTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGG 111151 |||| | |||||||| ||||| ||||||||||| ||||| || ||||| |||| || Sbjct 39246 GTTTCAGGATGCAAATCTTTGTGAAAACGTTGACGGGCAAGACTATTACATTGGAGGTGG 39305 Query 111152 AACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCG 111211 | || || || || ||| | || || || || ||||| || ||| |||| Sbjct 39306 AGCCAAGTGACTCGATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCAC 39365 Query 111212 TCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 111271 || ||||| | | || | ||| || || || ||||||||| | ||| || | | Sbjct 39366 CGGACCAACAGCGTTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACTCTGTCTG 39425 Query 111272 ATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 | || || || |||||||| || || | ||||| ||| | || || || ||||||| Sbjct 39426 ACTACAACATTCAAAAAGAGTCAACTTTGCATTTGGTGCTTCGACTTCGTGGTGGCA 39482 >seq2251 Length=6394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||||||||| ||||| | || || |||||||| || | || || || Sbjct 1001 AAAATGCAAATTTTTGTTAAAACCCTTACTGGGAAAACCATCACTCTTGAGGTTGAGCCT 1060 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||||| ||| ||| | || ||| |||||| ||||| || ||| | || || Sbjct 1061 AGCGACTCTATTGAGAACGTCAAAGCGAAAATTCAAGACAAGGAGGGCATACCACCAGAC 1120 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || ||| | ||||| | ||| ||||| || ||||| ||| |||| | |||| || Sbjct 1121 CAGCAACGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGGCGAACTCTCTCCGACTAC 1180 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||||| || || ||| | || ||| | || || || || Sbjct 1181 AACATTCAAAAGGAATCGACGCTCCATCTTGTTTTGAGACTACGAGGAGG 1230 >seq10174 Length=1708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||||||||| | |||||||| ||||| ||| | || ||||| Sbjct 1267 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAACCTTCT 1208 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || ||| ||| | || || ||||||| ||||| || || | || || || Sbjct 1207 GACTCTATTGAGAATGTGAAGGCAAAAATTCAAGACAAGGAGGGTATCCCTCCGGACCAG 1148 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||||| ||| ||||| ||||| |||||| | || |||| || ||| Sbjct 1147 CAGCGTCTTATTTTTGCTGGCAAGCAATTAGAAGATGGGCGGTCCTTGTCCGACTACAAT 1088 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || || || ||| | ||| | ||||| || ||||| Sbjct 1087 ATTCAGAAGGAGTCAACGCTTCATCTTGTGCTTCGTCTTCGTGGTGG 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421656507465016