Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2517 89.7 1e-12 >seq2517 Length=16602 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 229762 CCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACC 229821 || || ||||||| |||||| ||||| | ||||||||||| || || | ||||||||| Sbjct 11482 CCCATTCAATATCACGATATCTGGGAATTCTACAAGAAGGCTGTCGCTTCCTTCTGGACC 11541 Query 229822 ACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGAC 229881 ||| || ||| | || | ||| || ||||||| |||| ||| ||||||| | Sbjct 11542 GTTGAAGAGGTTGATTTGGCCAAAGATCTCACCGACTGG---GAGAGACTGAATGACGGC 11598 Query 229882 GAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATG 229941 || ||||| || || ||| | || | || || || | | ||||||||| || | Sbjct 11599 GAGCGTCACTTTATTTCCCACGTTCTCGCCTTCTTTGCTGCCAGCGATGGTATCGTCAAT 11658 Query 229942 GAAAATCT 229949 |||||||| Sbjct 11659 GAAAATCT 11666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057635472623300