Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2517 233 2e-56 seq116 228 1e-54 >seq2517 Length=16602 Score = 233 bits (258), Expect = 2e-56 Identities = 443/648 (68%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| || ||||| || |||||||| ||| | |||||| |||| ||||| || || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 || || ||||| |||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 || ||||| ||||| | ||||| || || || ||||| | || | ||| | || | Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | || | |||||| | ||||||||||||||||||| || ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || || || ||||| ||||| | | || || | || || || || || Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | ||| ||||||||| || || ||||| |||| ||| ||||| | || |||||||| Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC-TGC-TAAATTTTCATTCACTA 24534 | ||| |||| | || |||||| || || |||| ||| | ||||||||| || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGACGA 11651 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 | || || ||||| ||||| || || | || || ||||| | ||| | Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 24595 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 24654 | ||| | | ||| || ||| |||||| | | ||| || ||||| || ||||| || | Sbjct 11590 TCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGG 11531 Query 24655 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 24714 | || | ||||| || || | | |||||| || ||||||||||| || | ||||| | Sbjct 11530 AAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGA 11471 Query 24715 ATCTATTTGGATTTTTTGCAAGGATTGGTTCCATAACTAAATTAACAA 24762 | || | ||||| | |||||| || || ||| | | |||| || Sbjct 11470 ACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGAA 11423 >seq116 Length=136166 Score = 228 bits (252), Expect = 1e-54 Identities = 370/528 (70%), Gaps = 6/528 (1%) Strand=Plus/Minus Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 |||||| ||||| |||||||| ||||| | |||||||||||| || | | ||||| Sbjct 11140 CATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGC 11081 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || || ||| | || || | |||| || | ||||| |||||| ||||| | ||| Sbjct 11080 CCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTA 11021 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 || | | | | ||||| || || || || || ||||||| |||||||||||| |||| Sbjct 11020 GATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCTATT 10961 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 | |||| | ||| |||| | ||||||||| |||||||||| || || ||| | | Sbjct 10960 GAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAAAGT 10901 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 || || |||||| | || ||||| || || || || | || || ||||| Sbjct 10900 ACCCTTGCTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAATTAA 10841 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || || |||| | ||||| ||||| ||||| ||||| |||||| |||| | | || Sbjct 10840 GGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGATGAG 10781 Query 54397 AAAACAGCTAGACATTTGGTGACGACT--AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 |||||||| |||| ||| || ||| ||||||| ||| || | || || ||||| Sbjct 10780 GAAACAGCTTGACAGTTGAGGA--ACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGCA 10723 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCA 54513 || || ||||| |||| ||| | |||| |||||||| | || | || | ||| ||| Sbjct 10722 TGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACCA 10663 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 | ||||| || | | |||||||| |||||||| || ||||| || Sbjct 10662 CCG-TGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTC 10616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593618366656800