Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1681 86.0 5e-12 >seq1681 Length=28542 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | || || |||||||| || || ||||||| || || || | ||||| Sbjct 24819 CACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTC 24878 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 | |||||||| ||| | ||||| | |||||| || || | ||||||||||| Sbjct 24879 TAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTG 24938 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| || || | ||| ||||| | ||||| ||| | |||||||| || Sbjct 24939 GATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTTTT 24998 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | || || ||||| || ||||| Sbjct 24999 TCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422187615189560