Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq109 100 2e-16 seq1681 89.7 4e-13 >seq109 Length=140612 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| || || |||||||| || || ||| || |||||| Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | || | ||| |||||| ||||| || ||| | || |||||| Sbjct 74800 GATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCAG 74741 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || || || |||||||||||||||||| | ||| | | |||||||| Sbjct 74740 CAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAAC 74681 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||||||||| |||||| ||||||| || Sbjct 74680 ATCCAGAAGGAATCTACACTTCACTTGGTGTTGCG 74646 >seq1681 Length=28542 Score = 89.7 bits (98), Expect = 4e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || | ||||||||||| ||||||||||| || ||| | ||| || | || Sbjct 24915 AGATCAGCAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGA 24856 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| |||||||||||||| || ||| ||||||| || Sbjct 24855 CTACAATATCCAAAAGGAATCTACCCTCCACTTGGTGTTGCG 24814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410727158388740