Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2517 246 3e-60 seq1681 113 5e-20 seq109 86.0 6e-12 >seq2517 Length=16602 Score = 246 bits (272), Expect = 3e-60 Identities = 419/605 (69%), Gaps = 8/605 (1%) Strand=Plus/Plus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 ||||||| || | ||||| ||||| | || || ||| | ||||| ||||| | | Sbjct 11468 GGTTCGTTATCATGCCCATTCAATATCACGATATCTGGGAATTCTACAAGAAGGCTGTCG 11527 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723 | || ||||||||||| || ||||| || || |||| || | |||||||||| | Sbjct 11528 CTTCCTTCTGGACCGTTGAAGAGGTTGATTTGGCCAAAGATCTCACCGACTGGGAGAGAC 11587 Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783 |||| ||| |||||| || || || ||||| || ||||| || || |||||||| | Sbjct 11588 TGAATGACGGCGAGCGTCACTTTATTTCCCACGTTCTCGCCTTCTTTGCTGCCAGCGATG 11647 Query 116784 GCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGC 116843 | |||||||| || ||||| | | ||| || || || || ||| |||| || | Sbjct 11648 GTATCGTCAATGAAAATCTCTGCATGAACTTCTGCCAAGAAGTTCAAGTGCCCGAAGCTC 11707 Query 116844 GGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCC 116903 | || ||||| || | || || ||| | |||||| | ||||| ||||||||||| || Sbjct 11708 GTTGTTTCTATGGTATGCAAATTGCCGTTGAGAACATCCACTCCGAAATGTATTCTCTCC 11767 Query 116904 TCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATC 116959 |||||||||| ||| | | || | | | | | ||| | || || || || Sbjct 11768 TCATCGACACTTACATTCAGGAGCCGGCCAAACGTG-ATTTCC---TCTTCAATGCAATT 11823 Query 116960 GAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGA 117019 || || | || || ||||| |||||||||| ||||| ||| | ||||| || || Sbjct 11824 GAAACCCTTCCCTGTGTCAAGAAGAAGGCCGATTGGGCTCTGAGGTGGATTGCAAATAGG 11883 Query 117020 GAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCG 117079 || || || || ||||| | || |||||||| || || || || |||||||| || Sbjct 11884 GAAGCTAGCTACGCAGAGCGTGTTGTCGCCTTCGCTGCTGTTGAAGGTGTCTTCTTCTCT 11943 Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 || ||||| | || |||||||| ||||| || || ||||||||||| || |||||| Sbjct 11944 GGTTCATTCGCGTCAATCTTTTGGCTTAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTC 12003 Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 || || ||| | || | | || |||||| |||| || || ||||| ||| | ||| Sbjct 12004 AGTAATGAGTTGATTAGCCGAGATGAGGGTTTGCACACTGATTTCGCCTGCTTGATCTTC 12063 Query 117200 AAGCA 117204 || || Sbjct 12064 AAACA 12068 >seq1681 Length=28542 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || || || || ||||| ||||| |||| || || | | Sbjct 28351 AATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTGAGCCAAG 28410 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || |||| ||||| |||||||| ||| | ||||| Sbjct 28411 CGATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCA 28470 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || ||||| || ||||| || | || |||||| ||||||||| Sbjct 28471 ACAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGATGGTCGTACCCTCTCCGACTACAA 28530 Query 40869 CATCCAGAAGGA 40880 ||||||||| || Sbjct 28531 CATCCAGAAAGA 28542 >seq109 Length=140612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || |||||||| ||||| | || || || || | Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 40750 GAC-AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || || | | |||| ||||||| || || ||||| || || | || || Sbjct 74800 GATTATATTGAGAATG-TGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCA 74742 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | ||| |||||||| |||| || | || || ||| || ||||| Sbjct 74741 GCAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAA 74682 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || | |||||||| Sbjct 74681 CATCCAGAAGGAATCTACACTTCACTTGGTGTTGCG 74646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515129616261600