Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1681 114 2e-20 seq109 91.5 2e-13 >seq1681 Length=28542 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| ||||||| || || || ||||| || || | || | || | Sbjct 25031 ACGATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCT 24972 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | |||||||| ||| | || ||| || || || || ||||| || || || ||| Sbjct 24971 AGCGATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGAT 24912 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || | ||||| |||||||| ||||||||||||||| | || || || || || Sbjct 24911 CAGCAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTAC 24852 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| ||||| || | || ||||| || ||| | || ||||| || Sbjct 24851 AATATCCAAAAGGAATCTACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGCAT 24799 >seq109 Length=140612 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA---AGCA 124595 ||||| || ||| | || || |||| ||||||||||| ||| | || |||| ||| Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| | || ||||||| |||||| || ||||| || | ||| Sbjct 74800 GATTAT---ATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGAT 74744 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | | ||||| || || |||||||| || ||| | || || | ||||| Sbjct 74743 CAGCAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTAC 74684 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || || || ||||| || | || ||||| || ||| | || |||||| ||| Sbjct 74683 AACATCCAGAAGGAATCTACACTTCACTTGGTGTTGCGTCTTCGTGGTGGTGTTA 74629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755324645088000