Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2517 178 1e-39 >seq2517 Length=16602 Score = 178 bits (196), Expect = 1e-39 Identities = 394/582 (68%), Gaps = 18/582 (3%) Strand=Plus/Minus Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 |||||| || || | || || |||||| ||||| || || || | || || ||||| Sbjct 12069 GTGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTC 12010 Query 16279 GTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || ||||| || ||||| ||||| || || || || |||| |||||| || | || Sbjct 12009 ATTACTGAAAGTG--AGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCG 11952 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 ||||||||||| ||||| | ||||||||| || || || || || | ||||| |||| Sbjct 11951 AATGAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTA- 11893 Query 16397 GTTCTAtttt---tactttctatccattttttagcccaatttgctttttgtttAACACAG 16453 ||| || || || | ||||| | |||||||| || || | || |||||| Sbjct 11892 --GCTAGCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAG 11835 Query 16454 TTCATGTTCTCTATTGCATTAAA---TAAATAAtttttttCTTTGCTATCTAAAATATAA 16510 | | | || |||||||| || |||| | ||| | || || ||| ||| Sbjct 11834 GGAAGGGTTTCAATTGCATTGAAGAGGAAATCACGTTTGGC-CGGC--TCCTGAATGTAA 11778 Query 16511 GTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCA 16570 || || || || | | ||||||||| || || || ||||| | || || || | |||| Sbjct 11777 GTGTCGATGAGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCA 11718 Query 16571 TAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG-TTTTC 16629 || || || | |||||||| | ||| ||||| | | || || ||| || ||||| Sbjct 11717 TAGAAACAACGAGCTTCGGGCACTTGAACTTCTTGGCAGAA-GTTCATGCAGAGATTTTC 11659 Query 16630 GTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689 || || || |||||||| || ||||| || || || | ||| |||||| | || Sbjct 11658 ATTGACGATACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTC 11599 Query 16690 GTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749 | || ||| | |||||| | | |||||| | ||||| |||||||| || || Sbjct 11598 GCCGTCATTCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGT 11539 Query 16750 CCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 ||| || ||||| |||||||| || || | || ||| || || Sbjct 11538 CCAGAAGGAAGCGACAGCCTTCTTGTAGAATTCCCAGATATC 11497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462431580726000