Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq109 93.3 3e-14 seq1681 86.0 5e-12 >seq109 Length=140612 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||||||| ||||| || || |||||||| || | | || | ||||||| Sbjct 74652 ACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCTTCC 74711 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||||||||| || | || | | ||| ||||| || | || |||||||| | Sbjct 74712 AATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTTATCTCGA 74771 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||| || | ||| | || ||||||| ||||| ||||| ||||| Sbjct 74772 ATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGATAGTTTTG 74831 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| |||||||| ||||| Sbjct 74832 CCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 >seq1681 Length=28542 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||| || |||||||| | || || | ||| || Sbjct 24820 ACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTCT 24879 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||||||||| ||| ||||||| | || ||||| || | |||||||| || Sbjct 24880 AATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGG 24939 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | || || | |||||| ||||| || ||| |||| Sbjct 24940 ATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTTTTT 24999 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 ||||| | || ||||||||||| ||||| | |||| Sbjct 25000 CCGGTAAGAGTCTTTACAAAAATCTGCATCGTCAAAC 25036 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 18135 TCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAG 18194 ||||| || ||||||||||||| | || || |||||||| ||| ||||| ||| || Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 18195 ATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGT 18254 ||||| | |||||| || ||| | ||| ||||| || ||| | ||| || | Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 18255 GCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACA 18314 ||| || || | ||||| ||| | ||||| |||| || || | || || ||| Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 18315 AAAATTTGCATT 18326 |||||||||||| Sbjct 28362 AAAATTTGCATT 28351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379279690522950