Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2517 187 2e-42 seq116 123 2e-23 seq1681 93.3 4e-14 >seq2517 Length=16602 Score = 187 bits (206), Expect = 2e-42 Identities = 425/634 (67%), Gaps = 14/634 (2%) Strand=Plus/Plus Query 57527 GAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAA 57586 |||||| | || || || || | || ||| |||||| || || ||| | | ||||| Sbjct 11457 GAATCCTAGGAGGTTCGTTATCATGCCCATTCAATATCACGATATCTGGGAATTCTACAA 11516 Query 57587 AAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGA 57646 ||||| | || || || |||||||| ||||| || || || | || ||||| | ||| Sbjct 11517 GAAGGCTGTCGCTTCCTTCTGGACCGTTGAAGAGGTTGATTTGGCCAAAGATCTCACCGA 11576 Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 ||||| || || || ||| | | |||||| ||||| | || || || || Sbjct 11577 CTGGGAGAGACTGAATGACGGCGAGCGTCACTTTATTTCCCACGTTCTCGCCTTCTTTGC 11636 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766 || ||||||||| || || || ||| | | | || | |||||||| ||||| Sbjct 11637 TGCCAGCGATGGTATCGTCAATGAAAATCTCTGCATGAACTTCTGCCAAGAAGTTCAAGT 11696 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 | | || || | || || || || | ||| | ||| |||| ||| | || || ||||| Sbjct 11697 GCCCGAAGCTCGTTGTTTCTATGGTATGCAAATTGCCGTTGAGAACATCCACTCCGAAAT 11756 Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA----CTGT 57882 |||||| || |||||||| || ||| | |||| || | |||||| || || | Sbjct 11757 GTATTCTCTCCTCATCGACACTTACATTCAGGA-GCCG--GCCAAACGT-GATTTCCTCT 11812 Query 57883 TCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 |||| || || ||||| | ||| || |||||||| || ||| | | | |||| Sbjct 11813 TCAATGCAATTGAAACCCTTCCCTGTGTCAAGAAGAAGGCCGATTGGGCTCTGAGGTGGA 11872 Query 57943 T---AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999 | ||| || | || | | ||| ||| | | |||| ||||| || || |||| Sbjct 11873 TTGCAAATAGGG---AAGCTAGCTACGCAGAGCGTGTTGTCGCCTTCGCTGCTGTTGAAG 11929 Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059 || | ||||| || || || ||| |||| |||||| | ||||| || || || |||| Sbjct 11930 GTGTCTTCTTCTCTGGTTCATTCGCGTCAATCTTTTGGCTTAAGAAGCGTGGTCTCATGC 11989 Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 |||| || || || || || |||||||| || || |||||| | || |||||||| | Sbjct 11990 CCGGTCTCACTTTCAGTAATGAGTTGATTAGCCGAGATGAGGGTTTGCACACTGATTTCG 12049 Query 58120 CGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 | ||| | || | | ||||| ||||||| ||| Sbjct 12050 CCTGCTTGATCTTCAAACACATCGTCAATAGACC 12083 >seq116 Length=136166 Score = 123 bits (136), Expect = 2e-23 Identities = 357/544 (66%), Gaps = 4/544 (1%) Strand=Plus/Minus Query 23336 TCATTTTCAACGCGTCT-CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCG 23394 || |||| ||| | ||| |||||||||||| || ||||| ||||| | || || || | Sbjct 11157 TCGTTTTGAACCC-TCTGCATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCT 11099 Query 23395 GGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGC 23454 | || | |||||| ||||||||| | || |||| || | ||| || || | Sbjct 11098 AGTACGAATCTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGG 11039 Query 23455 ATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGAC 23514 |||||| || || ||||| | ||||| || || || | ||||||||| || ||||| || Sbjct 11038 ATGCCAGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTAC 10979 Query 23515 GTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCC 23574 || | || ||| | ||| |||||| ||||| || || | || ||||| | || Sbjct 10978 ATATCTAGCGGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATT 10919 Query 23575 TACGCCCGCCACACTCGAACCTTTTGCT-CGAACGTTGTGAACGTGGAAACCTATGCCTC 23633 || | | | | ||| ||||| |||| | ||||| | | ||| ||||||| Sbjct 10918 GGTTCCAGAAATAAAAGTACC-CTTGCTACGAATGCAATGAACATTAAGACCAATGCCTC 10860 Query 23634 CGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGT 23693 | | || || || | || || ||||| || || |||||||| ||||| || |||| Sbjct 10859 CAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGT 10800 Query 23694 CCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGA 23753 | || || | | || | |||||| |||| ||| | || || | | || Sbjct 10799 CATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGA 10740 Query 23754 ACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGG 23813 | || || ||| || || || || | | ||||| |||| ||||| || | || Sbjct 10739 AGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGG 10680 Query 23814 CGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 | || || | || | ||||| || || | || || ||||| | ||||| ||| |||| Sbjct 10679 CAGCTTCGAGATCACCACCGTGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTC 10620 Query 23874 TCTC 23877 |||| Sbjct 10619 TCTC 10616 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 || ||||| || | || || || || ||| ||||| |||||||| ||||| ||||| Sbjct 12586 GTGAACTGAATTGGGTCGGCTGCAGGACGGGTTCGAAGGTAATACATACCCGTTTTCAGC 12527 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| ||||||||||||| ||||| || || || | |||||||| | ||| | ||| Sbjct 12526 CCCTTCTTCCACGCGTAGAAATGCATGGAAGTAATCTTTCCATAGTTGGGCTCTTTTATG 12467 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | | ||| | ||||||||||| || || |||| | ||||| ||||| | || || Sbjct 12466 TGGAGATTTAGTGACTGACTCTGGTCAATGAACGGAGCACGATCTGCGGCAAGATCAATA 12407 Query 22295 AATGTACGCATCGACATTTCCCATACGGTCTTGTACAG 22332 | || | || |||||||| || ||||| || || Sbjct 12406 ATCGTTTTCTGCGGGATTTCCCAGACAGTCTTATAAAG 12369 >seq1681 Length=28542 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || || || || || ||||||||||| || | || || || ||| |||| | || Sbjct 24459 GTGAAAACACTCACGGGCAAAACGATAACTTTGGAGGTGGAGCCGAGTGACACGATTGAG 24400 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | || || || || |||||| ||||| | || || || ||||||||||| ||| Sbjct 24399 AATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGTCTCATA 24340 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 |||||||| || || |||||||| | || | || || || ||||| |||||| Sbjct 24339 TTCGCTGGTAAGCAACTGGAAGACGGTCGTACACTTTCGGACTACAATATTCAGAAAGAA 24280 Query 31385 TCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||||||||| || ||| | || | |||||| Sbjct 24279 TCTACTCTTCATCTTGTGCTTCGCCTTCGTGGCGGT 24244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445688892367200