Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq116 87.8 4e-12 >seq116 Length=136166 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 ||||||||| |||| || || | || || || || ||||| || ||||||||||| Sbjct 10863 CCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCAATA 10804 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 || ||||| | | | ||||| || || ||||| || |||||| || Sbjct 10803 CTGTCATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAA 10744 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 || || || || ||||||||||| || || | | ||||| |||| ||| || ||| Sbjct 10743 TTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGATACGTCTCA 10684 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 | | ||| || || || ||||||||||| | | ||||||||||| ||||| || Sbjct 10683 AAGGCAGCTTCGAGATCACCACCGTGAATGCCCAGGGACACACGCATAAACATGTGTTGG 10624 Query 95032 GGGCGCTC 95039 || | ||| Sbjct 10623 GGTCTCTC 10616 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 94186 ATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTG 94245 || ||||||||||| ||||| ||||| ||||| | | ||| || | |||||||||||| Sbjct 11543 ATTGAAGCCAAATTACACACGGCAGTCTCCTCGGGAGAACTATATTCAACAATTTCAGTG 11484 Query 94246 CACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTA 94305 || | ||| || ||||||| | || | || || ||||| || ||||||||| | | Sbjct 11483 CAAAGATTGGAGCACTTGATTGTACCCAGATGTTGATGGTTGGATTTTCTATTGCAAGCA 11424 Query 94306 TCCTT 94310 ||||| Sbjct 11423 TCCTT 11419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989407634484050