Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2517 269 3e-67 seq116 203 4e-47 >seq2517 Length=16602 Score = 269 bits (298), Expect = 3e-67 Identities = 451/648 (70%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 ||||| || ||||| || |||||||| ||||| |||||| |||| ||||| || || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 ||| || ||||| |||||||| || |||||||| ||||||||||| || || |||||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---A 33743 || || || ||||||| ||||| || ||||| ||||| | || | |||| | || | Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 33744 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 | | || | |||||| | ||||||||||||||||||| || ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 ||||| || ||||| ||||| | | || || | || ||||| ||||| Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | ||| ||||||||| || || ||||| |||| ||| || || | || |||||||| Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC-TGC-TAAATTTTCATTCACTA 33981 | ||| |||| | || |||||| || || |||| ||| | ||||||||| || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGACGA 11651 Query 33982 TTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 34041 | ||||| ||||| ||||| || || | || || ||||| | ||| | Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 34042 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 34101 | ||| | | ||| || ||| |||||| | | ||| || ||||| || ||||| || | Sbjct 11590 TCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGG 11531 Query 34102 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAA 34161 | || | ||||| || || | | |||||| || |||||||| || || | ||||| | Sbjct 11530 AAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGA 11471 Query 34162 ATCTATTTGGATTTGGTGCAAGGATAGGTTCCATAACTAAATTAACAA 34209 | || | ||||| ||| |||||| || || ||| | | |||| || Sbjct 11470 ACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGAA 11423 >seq116 Length=136166 Score = 203 bits (224), Expect = 4e-47 Identities = 362/526 (69%), Gaps = 2/526 (0%) Strand=Plus/Minus Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 |||||| ||||| |||||||| ||||| | |||||||||||| || | | ||||| Sbjct 11140 CATAAAAAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGC 11081 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || || ||| | || || | |||| || | ||||| |||||| ||||| | ||| Sbjct 11080 CCCGGTGTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTA 11021 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 || || | | | ||||| || || || || || ||||||| |||||||||||| |||| Sbjct 11020 GATTGCAAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCTATT 10961 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 | |||| | ||| |||| | || || ||| ||||||||| || || ||| | Sbjct 10960 GAACACTCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAAAGT 10901 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 || || |||||| | || ||||| || || || || | || || ||||| Sbjct 10900 ACCCTTGCTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAATTAA 10841 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || || |||| | || || ||||| || || || || ||||| |||| | | || Sbjct 10840 GGCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGATGAG 10781 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 |||||||| |||| ||| || | ||||||| ||| || | || || ||||| || Sbjct 10780 GAAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGCATG 10721 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATT 63753 || ||||| |||| ||| | |||| |||||||||| || | || | ||| ||| Sbjct 10720 AGTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACCACC 10661 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 | ||||| || | | |||||||| |||||||| || ||||| || Sbjct 10660 G-TGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTC 10616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629708090464800