Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq116 154 1e-32 seq2517 109 5e-19 >seq116 Length=136166 Score = 154 bits (170), Expect = 1e-32 Identities = 296/431 (69%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||||| ||||| ||||| | || || | | || || || | |||| || || || Sbjct 11044 ATCAGGATGCCAGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCCACCTTG 10985 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || | ||||||| | ||| |||| | | || | |||||| || | ||||| |||| Sbjct 10984 ATCTACATATCTAGCGGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATTGGATTC 10925 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCT-CGTATATTACTTATCGACAAT-CCT 38298 || || | || || ||| |||||||||| ||| || || | | | | || || Sbjct 10924 ACCATTGGTTCCAGAAATAAAAGTACCCTT-GCTACGAATGCAA-TGAACATTAAGACCA 10867 Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358 || || || |||| ||||| ||||| || || ||||| | ||||| | ||||| || Sbjct 10866 ATGCCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACCCTCA 10807 Query 38359 ATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCG 38418 |||||||||||||| |||| | | ||||| || |||| |||||| | ||| ||||| Sbjct 10806 ATACTGTCATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGAACTGGTGTTCCC 10747 Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 | || || | || || || ||||| ||||||| |||| |||| || ||| || Sbjct 10746 GAATTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGATACGTC 10687 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 || | || | || | |||||| |||||||| || || || || | ||| | ||| ||| Sbjct 10686 TCAAAGGCAGCTTCGAGATCACCACCGTGAATGCCCAGGGACACACGCATAAACATGTGT 10627 Query 38539 TGTGGTCTTTC 38549 || ||||| || Sbjct 10626 TGGGGTCTCTC 10616 Score = 96.9 bits (106), Expect = 3e-15 Identities = 287/442 (65%), Gaps = 3/442 (1%) Strand=Plus/Minus Query 36835 TAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTT 36894 |||||||| || ||||| |||||| |||| |||| |||||||| || | ||| Sbjct 12547 TAATACATACCCGTTTTCAGCCCCTTCTTCCACGCGTAGAAATGCATGGAAGTAATCTTT 12488 Query 36895 GCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCT 36954 | || | || | | ||| | | | | ||| ||||| || || || |||| | | Sbjct 12487 CCATAGTTGGGCTCTTTTATGTGGAGATTTAGTGACTGACTCTGGTCAATGAACGGAGCA 12428 Query 36955 CTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATT 37014 | || || || | || | ||| ||| || | || ||||| || || ||||| | Sbjct 12427 CGATCTGCGGCAAGATCAATAATCGTTTTCTGCGGGATTTCCCAGACAGTCTTATAAAGG 12368 Query 37015 TGTTTTATATTATCTGGTAAATC---TAAATGTTGAATAGAACCATTATGTAACACAATT 37071 ||||||| |||||| | | | || |||||||||||||| | || | ||| Sbjct 12367 GCCTTTATATCATCTGGAATACCACCTATGTGTTGAATAGAACCCTGATTGGCAATGATT 12308 Query 37072 GTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGA 37131 | || | | | | ||| || | || || |||||||| | ||| | Sbjct 12307 GCCAATTTGAGGGCCTCGGACCAAATGCCAAGATCAATGAGGTCTCTCAACATGTGATTA 12248 Query 37132 TTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGT 37191 || |||||||| ||||||||||| | || | | || | | | ||| || ||| ||| Sbjct 12247 TTGACAACCTGGAAATCTCCAGAGAGAACGCGACGTGAAAACACATTACTGGTAATGGGT 12188 Query 37192 TCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATT 37251 ||| | || || | |||| | ||||||| || |||||||| ||||||||||| | Sbjct 12187 TCAGTTGATTCGGTGTTACCGAGAATTTGAGCAGTTGATGCAGTGGGCATTGGTGCCAAA 12128 Query 37252 AGAAGGCTATTTCTCAATCCAT 37273 |||||||| ||||| | |||| Sbjct 12127 AGAAGGCTGTTTCTAATACCAT 12106 >seq2517 Length=16602 Score = 109 bits (120), Expect = 5e-19 Identities = 395/609 (65%), Gaps = 17/609 (3%) Strand=Plus/Minus Query 11615 TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674 ||||| || || || || || |||||| || ||||| || |||| || || | ||| Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734 ||| || || | |||||||| | || || || || | |||||| || | || ||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA 11792 |||||||| ||||| | || || ||||| || || || || || | ||| | || || Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 11793 CCTTGT-TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 ||| | | | ||||| | |||||||| || ||||| || || || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 11852 GTTTCTATAGCGTTAAATA--AATGCATTTTTTCTATATTATCTCTTACATAT--GTATC 11907 ||||| || || || || | || || ||| ||| | || | || || Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGG----CTCCTGAATGTAAGTGTC 11773 Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 || | | | ||||||||| || || || || || | || ||||| | |||||||| Sbjct 11772 GATGAGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAA 11713 Query 11968 ACATCGTGCCTCTGAACACT-GTACATCCA--CATAAAATCTTTCCGCTAAATTCTCATT 12024 ||| || || || | |||| | || || || || || | | | | ||| ||||| Sbjct 11712 ACAACGAGCTTCGGG-CACTTGAACTTCTTGGCAGAAGTTCATGCAG--AGATTTTCATT 11656 Query 12025 TACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 || |||||||| || | ||||| || || || | || ||||||| ||| | Sbjct 11655 GACGATACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCC 11596 Query 12085 TTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCA 12144 | | | | | | ||||| || | |||||| | ||||| || |||||||||||||| Sbjct 11595 GTCATTCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCA 11536 Query 12145 AAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAAT 12204 || || || | | || || | || ||||||||| ||||| | ||| || | || Sbjct 11535 GAAGGAAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGAT 11476 Query 12205 AACGAACCT 12213 ||||||||| Sbjct 11475 AACGAACCT 11467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468443335250400