Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2517 228 1e-54 seq116 228 1e-54 >seq2517 Length=16602 Score = 228 bits (252), Expect = 1e-54 Identities = 442/648 (68%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| || ||||| || |||||||| ||| | |||||| |||| ||||| || || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 || || ||||| |||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319 || ||||| ||||| | ||||| || || || ||||| | || | |||| | || | Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 | | || | |||||| | ||||||||||||||||||| || ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 || || || ||||| ||||| | | || || | || || || || || Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | ||| ||||||||| || || ||||| |||| ||| ||||| | || |||||||| Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-TGC-TAAATTTTCATTCACTA 36557 | ||| |||| | || |||||| || || |||| ||| | ||||||||| || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGACGA 11651 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || || ||||| ||||| || || | || || ||||| | ||| Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | ||| | | ||| || ||| |||||| | | ||| || ||||| || ||||| || | Sbjct 11590 TCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGG 11531 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || | ||||| || || | | |||||| || ||||||||||| || | ||||| | Sbjct 11530 AAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGA 11471 Query 36738 ATCTATTTTGATTTTTTGCAAGGATTGGTTCCATAACTAAATTAACAA 36785 | || | |||| | |||||| || || ||| | | |||| || Sbjct 11470 ACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGAA 11423 >seq116 Length=136166 Score = 228 bits (252), Expect = 1e-54 Identities = 428/619 (69%), Gaps = 14/619 (2%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 |||||| || | |||||| || ||| || |||||||| | || ||| || | Sbjct 11227 TTCGAATTCCTTTCCCCAGCAATCAGCCAGACCCGGACATTCGTGAGGGTCCATAAAAGT 11168 Query 66041 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 ||| | || ||||| || || | | |||||| ||||| |||||||| ||||| | Sbjct 11167 CCAAT-TC--TCATCGTTTTGAACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAA 11111 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 ||||| |||||| || | | ||||| || || ||| | || || | |||| Sbjct 11110 AAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTG 11051 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 || | |||| |||||| ||||| | ||| || || | | | ||||| || || || || Sbjct 11050 CAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCC 10991 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 || ||||||| |||||||||||| |||| | |||| | ||| |||| | ||||| Sbjct 10990 ACCTTGATCTACATATCTAGCGGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATT 10931 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC-ACGAATATTACTAATTGATA 66336 |||| ||||||||| || || ||| | | || ||||| |||||| | || | Sbjct 10930 GGATTCACCATTGGTTCCAGAAATAAAAGTACC-CTTGCTACGAATGCAATGAACATTAA 10872 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 |||| || || || || | || || ||||| || || |||| | ||||| ||||| | Sbjct 10871 GACCAATGCCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATAC 10812 Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT-- 66454 |||| ||||| |||||| |||| | | || |||||||| |||| ||| || ||| Sbjct 10811 CCTCAATACTGTCATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGA--ACTGG 10754 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||||||| ||| || | || || ||||| || || ||||| |||| ||| | |||| Sbjct 10753 TGTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGATG 10694 Query 66515 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 66573 |||||||||| || | || | ||| ||| | ||||| || | | |||||||| | Sbjct 10693 ATACGTCTCAAAGGCAGCTTCGAGATCACCACCG-TGAATGCCCAGGGACACACGCATAA 10635 Query 66574 ACATGTGCTGAGGTCTTTC 66592 ||||||| || ||||| || Sbjct 10634 ACATGTGTTGGGGTCTCTC 10616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658058360204400