Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2517 87.8 1e-12 >seq2517 Length=16602 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||| || ||||||||||| ||| | || ||||| ||||| ||| | || || ||||| Sbjct 11911 GCCTTCGCTGCTGTTGAAGGTGTCTTCTTCTCTGGTTCATTCGCGTCAATCTTTTGGCTT 11970 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| |||||||| || | | || || |||||||||||||| || || Sbjct 11971 AAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCAGTAATGAGTTGATTAGCCGAGATGAG 12030 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 ||| | ||| ||| || || || Sbjct 12031 GGTTTGCACACTGATTTCGCCTG 12053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356173208385730