Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2517 269 4e-67 seq116 251 1e-61 >seq2517 Length=16602 Score = 269 bits (298), Expect = 4e-67 Identities = 451/648 (70%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| || ||||| || |||||||| ||||| |||||| |||| ||||| | || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 || || ||||| |||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || ||||| ||||||| ||||| || || || ||||| |||| | |||| | || || Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 50125 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 | | || | |||||| | ||||||||||||||||||| || ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 ||||| || ||||| ||||| | | || || | || ||||| ||||| Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 | ||| ||||||||| || || ||||| |||| ||| || || | || |||||||| Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA-GC-TAAATTTTCATTCACTA 50359 | ||| |||| | || |||||| || || ||||| || | ||||||||| || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGACGA 11651 Query 50360 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTG 50419 | || || ||||| ||||| || || | || || ||||| || ||| | Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 50420 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 50479 | ||| | | ||| || ||| |||||| | | ||| || ||||| || ||||| || | Sbjct 11590 TCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGG 11531 Query 50480 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAA 50539 | || | ||||| || || | | |||||| || |||||||| || || | ||||| | Sbjct 11530 AAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGA 11471 Query 50540 ATCTATTTGGATTTGGTGCAAGGATCGGTTCCATAACTAAATTAACAA 50587 | || | ||||| ||| |||||| || || ||| | | |||| || Sbjct 11470 ACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGAA 11423 >seq116 Length=136166 Score = 251 bits (278), Expect = 1e-61 Identities = 458/663 (69%), Gaps = 12/663 (2%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 |||||| || | |||||| ||| | | || |||||||||| ||| ||| || | Sbjct 11227 TTCGAATTCCTTTCCCCAGCAATCAGCCAGACCCGGACATTCGTGAGGGTCCATAAAAGT 11168 Query 79920 CCACTCTCCATCATCCTTT---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 ||| | || ||||| ||| || | | |||||| ||||| |||||||| ||||| | Sbjct 11167 CCAAT-TC--TCATCGTTTTGAACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAA 11111 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 |||||||||||| || | | |||||| || || ||| | || || | |||| Sbjct 11110 AAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTG 11051 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 || | ||||| |||||| ||||| | ||| || || | | | || || || || || || Sbjct 11050 CAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCC 10991 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 || ||||||| |||||||||||| |||| | |||| | ||| |||| | ||||| Sbjct 10990 ACCTTGATCTACATATCTAGCGGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATT 10931 Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 80216 |||| ||||||||| || || ||| | | || || |||||| | || || Sbjct 10930 GGATTCACCATTGGTTCCAGAAATAAAAGTACCCTTGCTACGAATGCAATGAACATTAAG 10871 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || | || || ||||| || || |||| | ||||| ||||| || Sbjct 10870 ACCAATGCCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACC 10811 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--A 80334 ||| || || ||||| |||| | | || |||||||| |||| ||| || ||| Sbjct 10810 CTCAATACTGTCATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGA--ACTGGT 10753 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||||| ||| || | || || ||||| || || ||||| |||| ||||| |||| Sbjct 10752 GTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGA 10693 Query 80395 TACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAA 80453 |||||||||| || | ||| | ||| ||| | ||||| || | | |||||||| || Sbjct 10692 TACGTCTCAAAGGCAGCTTCGAGATCACCACCG-TGAATGCCCAGGGACACACGCATAAA 10634 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| || ||||| || |||||| || | | | | | ||||||||||| | Sbjct 10633 CATGTGTTGGGGTCTCTCCCAAATCTTGCCATCTTTCCTTAGAAGATAAGATTTTTCAAG 10574 Query 80514 AGT 80516 ||| Sbjct 10573 AGT 10571 Score = 91.5 bits (100), Expect = 2e-13 Identities = 318/492 (65%), Gaps = 12/492 (2%) Strand=Plus/Minus Query 78714 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 78772 |||| ||||| ||||| || ||| ||| || || || || || ||||| ||||||| Sbjct 12591 CAATAGTGAACTGAATTGGGTCGGCTGCAGGACGGGTTCGAAGGTAATACATACCCGTTT 12532 Query 78773 TTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 78832 | || || |||| ||||||||||||| || | || ||| | || ||| Sbjct 12531 TCAGCCCCTTCTTCCACGCGTAGAAATGCATGGAAGTAATCTTTCCATAGTTGGGCTCTT 12472 Query 78833 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 78892 ||| |||| ||| | || ||||| || || ||||| | | | ||||| || | | Sbjct 12471 TTATGTGGAGATTTAGTGACTGACTCTGGTCAATGAACGGAGCACGATCTGCGGCAAGAT 12412 Query 78893 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 78952 || ||||| || || || |||||||| | ||| ||||||| ||| ||||| |||| Sbjct 12411 CAATAATCGTTTTCTGCGGGATTTCCCAGACAGTCTTATAAAGGGCCTTTATATCATCTG 12352 Query 78953 GA-----AGGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGATC 79005 || | | ||| | ||||| || || || || || || || || |||| Sbjct 12351 GAATACCACCTATGTGT--TGAATAGAACCCTGATTGGCAATGATTGCCAAT--TTGAGG 12296 Query 79006 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 79065 | || ||| | || | | |||| | | || ||| || || || Sbjct 12295 GCCTCGGACCAAATGCCAAGATCAATGAGGTCTCTCAACATGTGATTATTGACAACCTGG 12236 Query 79066 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCA 79125 || |||||||| | || | || | | | |||||||||| ||||| ||||| Sbjct 12235 AAATCTCCAGAGAGAACGCGACGTGAAAACACATTACTGGTAATGGGTTCAGTTGATTCG 12176 Query 79126 TTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTT 79185 | || || | |||||||||||||||||| || ||||| ||||||| | | || ||| Sbjct 12175 GTGTTACCGAGAATTTGAGCAGTTGATGCAGTGGGCATTGGTGCCAAAAGAAGGCTGTTT 12116 Query 79186 CTAAGACCGTAT 79197 |||| ||| ||| Sbjct 12115 CTAATACCATAT 12104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718143911012400