Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2517 268 1e-66 seq116 241 2e-58 >seq2517 Length=16602 Score = 268 bits (296), Expect = 1e-66 Identities = 454/651 (70%), Gaps = 9/651 (1%) Strand=Plus/Minus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||||| || ||||| || |||||||| ||||| ||||||||||| ||||| || || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 || || ||||| |||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 42226 || ||||| ||||||| ||||| || || || ||||| | || | |||| | || | Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 42227 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 | | || | |||||| | ||||||||||||||||||| || ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 ||||| || ||||| ||||| | | || || | || || || ||||| Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | ||| ||||||||| || || ||||| |||| ||| || || | || |||||||| Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA-GC-TAAATTTTCGTTCACTA 42464 | || |||| || || |||||| || || ||||| || | |||||| || || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGACGA 11651 Query 42465 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG 42524 | || || ||||| ||||| || || | || || ||||| | ||| ||| Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCG-CCGTCA 11592 Query 42525 TT-AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAAT 42583 || | | | | ||| || ||| |||||| | | ||| || ||||| || ||||| || Sbjct 11591 TTCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAG 11532 Query 42584 GATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACA 42643 || || | ||||| || || | | ||||||||| ||||||||||| || | ||||| Sbjct 11531 GAAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACG 11472 Query 42644 AATCTATTTGGATTTGGTGCAAGGATCGGTTCCATAACTAAATTAACAAAT 42694 || || | ||||| ||| |||||| || || ||| | | |||| |||| Sbjct 11471 AACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGAAAT 11421 >seq116 Length=136166 Score = 241 bits (266), Expect = 2e-58 Identities = 431/620 (70%), Gaps = 16/620 (3%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||| || | |||||| || | | || |||||||| | || ||| || | Sbjct 11227 TTCGAATTCCTTTCCCCAGCAATCAGCCAGACCCGGACATTCGTGAGGGTCCATAAAAGT 11168 Query 72003 CCACTCTCCATCATCATTT---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 72059 ||| | || ||||| ||| || | | |||||| ||||| |||||||| ||||| | Sbjct 11167 CCAAT-TC--TCATCGTTTTGAACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAA 11111 Query 72060 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119 |||||||||||| || | | |||||| || || ||| | || || | |||| Sbjct 11110 AAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTG 11051 Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179 || | ||||| |||||| ||||| | ||| || || | | | || || || || || || Sbjct 11050 CAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCC 10991 Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239 || ||||||| |||||||||||| |||| | |||| | ||| |||| | ||||| Sbjct 10990 ACCTTGATCTACATATCTAGCGGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATT 10931 Query 72240 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGAT 72297 |||| |||||||||| || || ||| | | || || |||||| | || ||| Sbjct 10930 GGATTCACCATTGGTTCCAGAAATAAAAGTACCCTTGCTACGAATGCAATGAACATT--A 10873 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 ||||| || || || || | || || ||||| || || |||| | ||||| ||||| Sbjct 10872 AGACCAATGCCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATA 10813 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT- 72416 ||||| ||||| |||||| |||| | | || |||||||| |||| ||| || ||| Sbjct 10812 CCCTCAATACTGTCATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGA--ACTG 10755 Query 72417 -AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 ||||||| ||| || | || || ||||| || || ||||| |||| ||||| |||| Sbjct 10754 GTGTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGAT 10695 Query 72476 TGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATT 72534 |||||||||| || | ||| | ||| ||| | || || || | | |||||||| Sbjct 10694 GATACGTCTCAAAGGCAGCTTCGAGATCACCACCG-TGAATGCCCAGGGACACACGCATA 10636 Query 72535 AACATATGCTGAGGTCTTTC 72554 ||||| || || ||||| || Sbjct 10635 AACATGTGTTGGGGTCTCTC 10616 Score = 102 bits (112), Expect = 1e-16 Identities = 319/490 (65%), Gaps = 12/490 (2%) Strand=Plus/Minus Query 70797 CAAT-GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTT 70855 |||| || |||||||| || || ||| | || || || || ||||| || |||| Sbjct 12591 CAATAGTGAACTGAATTGGGTCGGCTGCAGGACGGGTTCGAAGGTAATACATACCCGTTT 12532 Query 70856 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGG 70915 | || || |||| |||| |||||||| || | || |||| | || || Sbjct 12531 TCAGCCCCTTCTTCCACGCGTAGAAATGCATGGAAGTAATCTTTCCATAGTTGGGCTCTT 12472 Query 70916 CTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 70975 |||||| | ||| | |||||||| || || ||||| | | | ||||| || | | Sbjct 12471 TTATGTGGAGATTTAGTGACTGACTCTGGTCAATGAACGGAGCACGATCTGCGGCAAGAT 12412 Query 70976 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 71035 || ||||| || || || |||||||| | ||| ||||||| ||| ||||| |||| Sbjct 12411 CAATAATCGTTTTCTGCGGGATTTCCCAGACAGTCTTATAAAGGGCCTTTATATCATCTG 12352 Query 71036 GAAGG-----TTTGTATTCTGAATGGATCCACCATCTGCAATAAT--CCTATTTTTGATC 71088 ||| | ||| || |||| || || || ||||| || || |||| || Sbjct 12351 GAATACCACCTATGTGTT--GAATAGAACCCTGATTGGCAATGATTGCCAATTT--GAGG 12296 Query 71089 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGA 71148 | || ||| | || | | |||| | | ||| ||| || || || Sbjct 12295 GCCTCGGACCAAATGCCAAGATCAATGAGGTCTCTCAACATGTGATTATTGACAACCTGG 12236 Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 || |||||||| | || | ||| | | | |||||||||| ||||| ||| || Sbjct 12235 AAATCTCCAGAGAGAACGCGACGTGAAAACACATTACTGGTAATGGGTTCAGTTGATTCG 12176 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTT 71268 | || || | ||||||||||||||||||||| ||||| ||||||| | || || ||| Sbjct 12175 GTGTTACCGAGAATTTGAGCAGTTGATGCAGTGGGCATTGGTGCCAAAAGAAGGCTGTTT 12116 Query 71269 CTAAGACCAT 71278 |||| ||||| Sbjct 12115 CTAATACCAT 12106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671022505671600