Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1681 86.0 6e-12 seq109 86.0 6e-12 >seq1681 Length=28542 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||||||||||| || || ||||| || | ||| | |||||| ||||| Sbjct 24268 ATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCTTCCAGTTG 24327 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||| | || ||||| |||||||| || || || ||||||||||| || || Sbjct 24328 CTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTT 24387 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | |||||| | || || || || | ||| | ||| ||||| || Sbjct 24388 CGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGT 24447 Query 143161 CAATGTTTTTAC 143172 | |||||| || Sbjct 24448 GAGTGTTTTCAC 24459 >seq109 Length=140612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| ||||||||| || || ||||||||||| Sbjct 74634 CCACCACGAAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAG 74693 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||| || || | |||| |||||||||||| | ||| Sbjct 74694 AGAGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGA 74753 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || |||||| || | | || | || | ||| || ||| Sbjct 74754 ATACCCTCCTTATCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACT 74813 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || ||||| || || ||||| || || || ||||| Sbjct 74814 TCAAGAGTGATAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506926242871200