Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2517 179 5e-40 seq116 86.0 9e-12 >seq2517 Length=16602 Score = 179 bits (198), Expect = 5e-40 Identities = 390/572 (68%), Gaps = 19/572 (3%) Strand=Plus/Plus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 ||||| || || |||||| | ||||| |||||| || ||||| ||||| || |||||| Sbjct 11491 TATCACGATATCTGGGAATTCTACAAGAAGGCTGTCGCTTCCTTCTGGACCGTTGAAGAG 11550 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || ||| || |||| || || ||| ||||||| | ||| ||| ||||| | Sbjct 11551 GTTGATTTGGCCAAAGATCTCACCGACTGGGAGAGAC---TGAATGACGGCGAGCGTCAC 11607 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 ||||| || ||| || | ||||||||||| | | |||||| |||||||| || ||||| Sbjct 11608 TTTATTTCCCACGTTCTCGCCTTCTTTGCTGCCAGCGATGGTATCGTCAATGAAAATCTC 11667 Query 125190 TTGACACGA--TTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATT 125245 | || || |||| |||| |||| | | || || | ||| || || || || | Sbjct 11668 T--GCATGAACTTCTGCCAAGAAGTTCA-AGTGCCCGAAG-CTCGTTGTTTCTATGGTAT 11723 Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||| |||||||| | ||||| |||||||| ||| || || |||| ||||| Sbjct 11724 GCAAATTGCCGTTGAGAACATCCACTCCGAAATGTATTCTCTCCTCATCGACACTTACAT 11783 Query 125306 TCGCGATCCG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTAT 125362 || || ||| ||||| | | ||||| || ||||| || || | || | | | Sbjct 11784 TCAGGAGCCGGCCAAACGT---GATTTCCTCTTCAATGCAATTGAAACCCTTCCCTGTGT 11840 Query 125363 ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG-ATGACGACAAGTCTTCGTACGCCG 125421 || ||||| | |||| | ||||||| | | | ||| || ||||| | Sbjct 11841 CAAGAAGAAGGCCGATTGGGCTCTGAGGTGGATTGCAAATAGGGAAG-CTAGCTACGCAG 11899 Query 125422 ACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCA 125481 | | | || || ||||| || || || || ||||||| || ||| || ||| | | Sbjct 11900 AGCGTGTTGTCGCCTTCGCTGCTGTTGAAGGTGTCTTCTTCTCTGGTTCATTCGCGTCAA 11959 Query 125482 TCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATAT 125541 |||||||||| |||||||| || ||||||||||| || || |||||| ||||| || Sbjct 11960 TCTTTTGGCTTAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCAGTAATGAGTTGATTA 12019 Query 125542 CTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| ||||| | ||| ||| || ||| Sbjct 12020 GCCGAGATGAGGGTTTGCACACTGATTTCGCC 12051 >seq116 Length=136166 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 || |||||||||||||| || ||| || ||| | || ||| | || || || | | | Sbjct 12372 TATAAGACTGTCTGGGAAATCCCGCAGAAAACGATTATTGATCTTGCCGCAGATCGTGCT 12431 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||||||||||| || | ||||| || | ||||||| ||| | Sbjct 12432 CCGTTCATTGACCAGAGTCAGTCACTAAATCTCCACATAAAAGAGCCCAACTATGGAAAG 12491 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 || ||||| || || || ||||| ||||| ||||| || || ||||| ||||| || || Sbjct 12492 ATTACTTCCATGCATTTCTACGCGTGGAAGAAGGGGCTGAAAACGGGTATGTATTACCTT 12551 Query 98220 AGAAC 98224 |||| Sbjct 12552 CGAAC 12556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740930348331600