Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1681 105 5e-18 seq109 86.0 5e-12 >seq1681 Length=28542 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 ||||| || |||||||| ||| || | | | ||||| | ||| |||||||| | Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 || | |||||||||||| ||||| || || ||||| ||| || ||||||| | Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || ||||||||||| || || || | || || |||||||| || ||||| || ||| Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 15353 AAAATTTGCAT 15363 ||||||||||| Sbjct 28362 AAAATTTGCAT 28352 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || ||||| || || ||||| || ||||| || | | | | | || Sbjct 24817 AACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCC 24876 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||||||||||||| || | || | ||| || || || ||||||||||| ||||| Sbjct 24877 TCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 24936 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| ||| | || || ||||||||| || || || | ||||||||| Sbjct 24937 TGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTT 24996 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||||||||| ||||| Sbjct 24997 TTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 >seq109 Length=140612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || ||||||||||| ||| | | | ||| Sbjct 74649 AACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCT 74708 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||||||||| ||| | ||||||||||| || || ||||| || || || || Sbjct 74709 TCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTTATCT 74768 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 | |||||| ||| ||| | || || ||| || || || | || || ||| Sbjct 74769 CGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGATAGTT 74828 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || | ||||| |||||||| ||||| Sbjct 74829 TTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362117800439310