Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1681 104 2e-17 >seq1681 Length=28542 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||| |||||||| |||||||| |||| || || | | ||| Sbjct 24817 AACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCC 24876 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || | ||||| || ||| | ||||| | ||||||||| || | || || ||||| Sbjct 24877 TCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 24936 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || ||| || || | ||| ||||||| |||||| ||| | ||||||||| Sbjct 24937 TGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTT 24996 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | ||| || |||||||| ||||| Sbjct 24997 TTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414502518250540