Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1681 93.3 3e-14 >seq1681 Length=28542 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || ||||| |||||||| || |||||| || | Sbjct 24814 CGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCA 24873 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || ||||| || || ||| || | ||| ||||| || | || || ||||| || Sbjct 24874 TCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTG 24933 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | ||||| || || | | || || ||| | || | || || || || Sbjct 24934 TCCTGGATCTTCGCC---TTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTA 24990 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| |||||||| ||||| ||||| ||||| Sbjct 24991 ATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||| ||| ||| || | |||||| ||||| | ||| ||||| || || Sbjct 28506 TCTTCCAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTG 28447 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| |||| |||| | | ||| || ||| | || | ||| || ||||| Sbjct 28446 TCTTGAATCTTAGCCT---TTACATTCTCAATGGTATCGCTTGGCTCAACTTCGAGAGTG 28390 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||| || || ||||||||||| Sbjct 28389 ATAGTTTTACCAGTAAGAGTCTTCACAAAAATTTGCAT 28352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318723558231180