Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq109 96.9 3e-15 seq1681 87.8 2e-12 >seq109 Length=140612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || ||||||||||| || || ||||||||||| | ||| ||| Sbjct 74648 CAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATC 74707 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||||||||| || |||| | | || ||||| || | || || || || Sbjct 74708 TTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTTATC 74767 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||||| | ||| | |||| | || || ||| | || || || Sbjct 74768 TCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGATAGT 74827 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||| || || |||||||||||||| ||||| Sbjct 74828 TTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 >seq1681 Length=28542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || || |||||||| ||||| || ||||| || || ||| ||| Sbjct 24816 CAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATC 24875 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || ||||||||||| ||| | ||||| | ||| ||||| || | ||||| ||||| Sbjct 24876 CTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTC 24935 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || || || | | | | ||||| ||| || ||| | |||||||| Sbjct 24936 CTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGT 24995 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAAC 20216 ||| ||||| | || || |||||||| ||||| | |||| Sbjct 24996 TTTTCCGGTAAGAGTCTTTACAAAAATCTGCATCGTCAAAC 25036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419516068168710