Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1681 161 2e-34 seq13481 129 1e-24 seq2406 95.1 3e-14 seq10106 89.7 1e-12 >seq1681 Length=28542 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || ||||| ||||| || | ||| | || || |||| |||||| || Sbjct 24832 GTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTCTAATTGTTTGCCT 24891 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| |||||||| || ||||| ||||| || || Sbjct 24892 GCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTA 24951 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||||||| || || || |||||||| || || || ||||| || Sbjct 24952 ACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTC 25011 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 25012 TTTACAAAAATCTGCAT 25028 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||||||||||||||| ||||| || || || | |||||| Sbjct 24259 AAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTC 24318 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || ||||| || || || | ||| ||||| || || ||||||||||| || Sbjct 24319 TTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTC 24378 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | || || || || || ||||| | || || || Sbjct 24379 CTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGT 24438 Query 104527 CTTACCAGTAAGTGTTTTTAC 104547 || || || |||||||| || Sbjct 24439 TTTGCCCGTGAGTGTTTTCAC 24459 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||||||| || || ||||| || || || | ||| ||||| ||||| || |||||||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||||| || || || || || || || || |||||||| || |||||||| Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||||||||| || || || || || || ||||| ||||||||||| || || ||| Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 28362 AAAATTTGCATT 28351 >seq13481 Length=537 Score = 129 bits (142), Expect = 1e-24 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || ||||| | ||| ||||| ||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 537 AAGATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTCACA 478 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 || || | ||||| ||||| || || || |||||||| || || |||||||| || ||| Sbjct 477 TTCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTT 418 Query 104546 ACAAATATCTGCAT 104559 ||||| |||||||| Sbjct 417 ACAAAAATCTGCAT 404 >seq2406 Length=17766 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| ||||||| || || || || ||||| ||||||||||| ||||| | ||| || Sbjct 17650 AAGTACAAGATGTAGGGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGTACGACCATC 17709 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTT 104463 ||| ||||| || |||||||| || || | |||||| || || || || || || || Sbjct 17710 TTCCAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCCTCCTT 17766 >seq10106 Length=943 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||| |||||||||||| || |||| |||| | | |||||| || || | ||| || Sbjct 684 GTATATTCTTTCTGAACATCGCAGTCTGATAAGATACGACCGTCCTCCAGCTCTTTGCCG 743 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||| | || | | ||| |||| | || ||||||||||| ||| | ||||| ||||| Sbjct 744 GCATAGATAATACGCTGCTGATTTGATGGAATTCCTTCTTTGTCCCGGATCTTCGCTTTC 803 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || ||||| | || || || || | || | | | Sbjct 804 ACATTCTCAATTGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCATGTGGGCGCT 863 Query 104543 TTTACAAATATCTGCAT 104559 | ||||| |||||||| Sbjct 864 CTCACAAAGATCTGCAT 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151193195618280