Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1681 134 1e-26 seq109 118 1e-21 seq13481 105 6e-18 >seq1681 Length=28542 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | |||||||||||||| | || || || || |||| | | Sbjct 24814 CGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCA 24873 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| | ||||| || ||||||| | | ||||||||||||||||| ||||| ||| Sbjct 24874 TCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTG 24933 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| || || || || ||||| |||| || || Sbjct 24934 TCCTGGATCTTCGCCTTAACATTCTCGATTGTATC-GCTAGGCTCGACTTCAAGTGTAAT 24992 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| |||||||| || ||||| |||||||| Sbjct 24993 GGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | | ||| || ||||| ||||| || || || Sbjct 28507 ATCTTCCAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTT 28448 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | ||| || ||||| || | | || || || ||| || || || | |||| Sbjct 28447 GTCTTGAATCTTAGCCTTTACATTCTCAATGGTATC-GCTTGGCTCAACTTCGAGAGTGA 28389 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||||||||| |||||||| || ||||| Sbjct 28388 TAGTTTTACCAGTAAGAGTCTTCACAAAAATTTGCAT 28352 >seq109 Length=140612 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||||||||||| || | ||| ||||| | ||| | | Sbjct 74646 CGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCA 74705 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| ||| | || || || | ||||||||||| ||||||||| || || Sbjct 74706 TCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTTA 74765 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || |||||| ||||| || | | | || ||| | || || |||| ||||| Sbjct 74766 TCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGATA 74825 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||||| ||||| |||||||| Sbjct 74826 GTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 >seq13481 Length=537 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||||| || ||||||||||||||||| ||||||||||| | || || || || || Sbjct 537 AAGATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTCACA 478 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | || ||| | ||||| |||| || |||||||||||||||||||| || Sbjct 477 TTCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTT 418 Query 94994 ACAAAGATCTGCATGCTTACAACATA 95019 ||||| |||||||| |||||| ||| Sbjct 417 ACAAAAATCTGCATAATTACAAGATA 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448213253367600