Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1990 187 4e-43 seq13327 178 2e-40 seq897 174 2e-39 >seq1990 Length=23529 Score = 187 bits (206), Expect = 4e-43 Identities = 202/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||| | | ||||||||||||||| ||||| || |||||||| ||||| Sbjct 6032 CGCTAAGCGTCATAGGAAGGTTCTTCGAGATAACATTCAAGGTATTACCAAGCCGGCTAT 5973 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||| ||||| || || ||| |||| || | |||| ||||| | Sbjct 5972 CCGGCGTCTTGCTCGTCGAGGTGGCGTGAAACGTATCTCCGGTCTCATCTACGAAGAAAC 5913 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | |||||| | | |||||| | |||||| || ||||| || Sbjct 5912 TCGTGGTGTTCTGAAAGTTTTCCTCGAAAACGTTATTCGTGATGCCGTCACTTATACTGA 5853 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| |||||| ||||||| | |||||||| | ||||| || || Sbjct 5852 ACATGCCAAGAGAAAGACCGTCACCGCCATGGACGTTGTCTATGCTCTTAAACGGCAGGG 5793 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| || ||||| Sbjct 5792 ACGCACTTTATATGGTTTCGGTGGTTAA 5765 >seq13327 Length=551 Score = 178 bits (196), Expect = 2e-40 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| || || |||||||||||||||||||| |||||||| ||||||||||| Sbjct 365 CGTGATAACATTCAGGGCATCACCAAGCCAGCTATCCGACGTCTGGCCCGTCGTGGTGGT 306 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | ||||||| |||| ||| | ||| | ||| ||||||| Sbjct 305 GTGAAGCGCATCTCCGGTCTCATCTATGAGGAGACTCGAGGTGTGCTCAAGGTCTTCCTA 246 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | |||||| || |||||||||||||| || || ||||| ||||| Sbjct 245 GAGAATGTGATTCGCGATGCTGTCACTTATACCGAGCACGCGAAGCGCAAGACCGTCACT 186 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | ||||| ||| | || || || ||||||| | || ||||| || || Sbjct 185 GCTATGGATGTTGTCTACGCACTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGT 126 Query 16697 TAA 16699 ||| Sbjct 125 TAA 123 >seq897 Length=49960 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||| | | || ||||||||||||||||| ||||| ||||| || || Sbjct 19959 CGCTAAGCGTCATAGGAAGGTGCTGCGAGATAACATCCAAGGCATCACGAAGCCTGCCAT 20018 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||| ||||| || || ||||| || | ||||| | |||| || |||| Sbjct 20019 TCGTCGTCTGGCACGTCGAGGAGGTGTCAAACGCATTTCTGGTCTAATCTACGAGGAGAC 20078 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | || || ||| |||||| |||||| || ||| || || Sbjct 20079 TCGTGGCGTCCTCAAGGTGTTTCTTGAGAATGTTATCAGAGATGCTGTCACCTACACTGA 20138 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || |||||||| ||| | |||||| | |||||||| | ||||| || || Sbjct 20139 ACACGCTAAGCGAAAGACTGTTACCGCAATGGATGTGGTCTATGCCCTTAAACGCCAGGG 20198 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| | || |||||||| Sbjct 20199 CCGTACTCTCTACGGTTTTGG 20219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062481989630