Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3050 95.1 2e-14 >seq3050 Length=12077 Score = 95.1 bits (104), Expect = 2e-14 Identities = 172/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 |||||||||||| ||||| || |||| | |||| |||| ||||| |||||||| || Sbjct 3468 TGGTATTCTCTTTAATCATGAGAGTCCACGCCGAGGAAAGACTTTTGTCACTCGTAAAAT 3409 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACA-GAAGATTCTTTATCTTGGTAATC 194064 || | | | | | || || ||| |||| || || | |||||||||| Sbjct 3408 CACCCGTGCAGTCGCCCAAATTAAATACGGTAAACAAGAAG-TTATTGAACTTGGTAATC 3350 Query 194065 TTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGT 194124 | ||||| | | |||||||| | || | || |||||| | ||||||||| | ||| Sbjct 3349 TCAATGCCGAACGTGATTGGGGCTATGCTGAAGACTATGTTTACGCGATGTGGCTTATGC 3290 Query 194125 TGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAG 194184 ||||||| ||||| || | ||||| || ||||| | || ||| || | ||| |||| Sbjct 3289 TGCAACAAGATGAGCCTGTTGATTTAGTTATTGCCTCTGGCGAAAAGCACAGTGTAAGAG 3230 Query 194185 ACTTTGTGA 194193 | |||| || Sbjct 3229 AATTTGCGA 3221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807414786339600