Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2517 255 7e-63 seq116 215 6e-51 >seq2517 Length=16602 Score = 255 bits (282), Expect = 7e-63 Identities = 448/648 (69%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 ||||| || ||||| || |||||||| ||||| |||||| |||| ||||| | || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 || || ||||| |||||||| || |||||||| ||||||||||| || || |||||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---A 33465 || ||||| ||||||| ||||| || ||||| ||||| | || | |||| | || | Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 33466 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525 | | || | |||||| | ||||||||||||||||||| || ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 ||||| || ||||| ||||| | | || || | || ||||| ||||| Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645 | ||| ||||||||| || || ||||| |||| ||| || || | || |||||||| Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-CGC-CAAATTTTCATTCACTA 33703 | ||| |||| | || |||||| || || |||| || | ||||||||| || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGACGA 11651 Query 33704 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33763 | || || ||||| ||||| || || | || || ||||| | ||| | Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 33764 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 33823 | ||| | | ||| || ||| |||||| | | ||| || ||||| || ||||| || | Sbjct 11590 TCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGG 11531 Query 33824 ATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAA 33883 | || | ||||| || || | | |||||| || | |||||| || || | ||||| | Sbjct 11530 AAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGA 11471 Query 33884 ATCTATTTGGATTTGGTGCAAGGATGGGTTCCATAACTAAATTAACAA 33931 | || | ||||| ||| |||||| ||| || ||| | | |||| || Sbjct 11470 ACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGAA 11423 >seq116 Length=136166 Score = 215 bits (238), Expect = 6e-51 Identities = 423/618 (68%), Gaps = 12/618 (2%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||| || | |||||| || ||| || |||||||| | || ||| || | Sbjct 11227 TTCGAATTCCTTTCCCCAGCAATCAGCCAGACCCGGACATTCGTGAGGGTCCATAAAAGT 11168 Query 63197 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 ||| | || ||||| || || | | |||||| ||||| |||||||| ||||| | Sbjct 11167 CCAAT-TC--TCATCGTTTTGAACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAA 11111 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 |||||||||||| || | | ||||| || || ||| | || || | |||| Sbjct 11110 AAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTG 11051 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 || | ||||| |||||| ||||| | ||| || || | | | ||||| || || || || Sbjct 11050 CAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCC 10991 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 || ||||||| |||||||||||| |||| | |||| | ||| |||| | || || Sbjct 10990 ACCTTGATCTACATATCTAGCGGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATT 10931 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63493 ||| ||||||||| || || ||| | | || || |||||| | || || Sbjct 10930 GGATTCACCATTGGTTCCAGAAATAAAAGTACCCTTGCTACGAATGCAATGAACATTAAG 10871 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| || || || || | || || ||||| || || |||| | || || |||||||| Sbjct 10870 ACCAATGCCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACC 10811 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--A 63611 ||| || || ||||| |||| | | || |||||||| |||| ||| || ||| Sbjct 10810 CTCAATACTGTCATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGA--ACTGGT 10753 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||||| ||| || | || || ||||| || || ||||| |||| ||| | |||| Sbjct 10752 GTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGA 10693 Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730 |||||||||| || | || | ||| ||| | ||||| || | | |||||||| || Sbjct 10692 TACGTCTCAAAGGCAGCTTCGAGATCACCACCG-TGAATGCCCAGGGACACACGCATAAA 10634 Query 63731 CATGTGCTGAGGTCTTTC 63748 |||||| || ||||| || Sbjct 10633 CATGTGTTGGGGTCTCTC 10616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622838885055600