Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2517 118 3e-21 >seq2517 Length=16602 Score = 118 bits (130), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT---GAACGTTCATTCGCGGAA 22491 ||||| ||||| |||||||| |||| ||||| ||| ||| | | ||| || Sbjct 11842 AAGAAGAAGGCCGATTGGGCTCTGAGGTGGATTGCAAATAGGGAAGCTAGCTACGCAGAG 11901 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || || |||| |||||||| | ||||| ||||| |||| ||||| Sbjct 11902 CGTGTTGTCGCCTTCGCTGCTGTTGAAGGTGTCTTCTTCTCTGGTTCATTCGCGTCAATC 11961 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAATTA 22609 |||||||| || || |||| | ||||| ||||| || ||||| |||||||| |||| Sbjct 11962 TTTTGGCTTAAGAAGCGTGGTCTCATGCCCGGTCTCAC--TTTCAGTAATGAGTTGATTA 12019 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||||||||||| | || || ||||| || || Sbjct 12020 GCCGAGATGAGGGTTTGCACACTGATTTCGCCTG 12053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303121313877620