Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1681 145 7e-30 seq13481 87.8 2e-12 seq116 82.4 7e-11 >seq1681 Length=28542 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| ||| || || | ||| || |||||||| || ||||| || Sbjct 24801 GCCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGA 24860 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||||| || |||||||| |||| | ||||||||| || ||||| Sbjct 24861 CAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGG 24920 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| ||| ||| | | ||| | |||||| | | ||||| Sbjct 24921 AATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGAC 24980 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| ||||| ||||| ||||| ||||||||||| Sbjct 24981 TTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 >seq13481 Length=537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131102 AGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT 131161 |||||| |||||||| || ||||| |||||||||||||| ||| ||| || | | Sbjct 536 AGATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTCACAT 477 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 ||| | ||||| | | ||||| || | |||| |||||| || || ||||| |||| Sbjct 476 TCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTTA 417 Query 131222 CGAAAATCTGCAT 131234 | ||||||||||| Sbjct 416 CAAAAATCTGCAT 404 >seq116 Length=136166 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 145628 ATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCG 145687 || || ||||||||||| || || |||||||||| || |||| || || || | | Sbjct 11543 ATTGAAGCCAAATTACACACGGCAGTCTCCTCGGGAGAACTATATTCAACAATTTCAGTG 11484 Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 || | |||| || ||||| || ||||||| ||| || || ||| || ||||| || Sbjct 11483 CAAAGATTGGAGCACTTGATTGTACCCAGATGTTGATGGTTGGATTTTCTATTGCAAGCA 11424 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCC 145780 |||||||| | |||| | || ||||||||| Sbjct 11423 TCCTTGTAAATCATGAAGGGATTACCAGTCTCC 11391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471930728774400