Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq116 242 5e-59 seq2517 233 2e-56 >seq116 Length=136166 Score = 242 bits (268), Expect = 5e-59 Identities = 429/618 (69%), Gaps = 12/618 (2%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||| || | |||||| || |||| || |||||||| | || ||| || | Sbjct 11227 TTCGAATTCCTTTCCCCAGCAATCAGCCAGACCCGGACATTCGTGAGGGTCCATAAAAGT 11168 Query 63052 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 ||| | || ||||| || || | | |||||| ||||| |||||||| ||||| | Sbjct 11167 CCAAT-TC--TCATCGTTTTGAACCCTCTGCATAAAAAGATCGGGAATCCAGAGAGCCAA 11111 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 |||||||||||| || | | ||||| || || ||| | || || | |||| Sbjct 11110 AAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGTGTTCCTACGCAGTTCCATGAACTG 11051 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 || | ||||| |||||| ||||| | ||| || || | | | ||||| || || || || Sbjct 11050 CAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGCAAAAGCACCAGGACGCTTATTGCC 10991 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 || ||||||| |||||||||||| |||| | |||| | ||| |||| | ||||| Sbjct 10990 ACCTTGATCTACATATCTAGCGGTGCTATTGAACACTCGGAGCATAGGAACCAAGCCATT 10931 Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63348 |||| ||||||||| || || ||| | | || || |||||| | || || Sbjct 10930 GGATTCACCATTGGTTCCAGAAATAAAAGTACCCTTGCTACGAATGCAATGAACATTAAG 10871 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| || || || || | || || ||||| || || |||| | ||||| ||||| || Sbjct 10870 ACCAATGCCTCCAGCATTCTTTGAAATTAAGGCACACTGTTTGAGTGTATCGTAGATACC 10811 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--A 63466 ||| ||||| |||||| |||| | | || |||||||| |||| ||| || ||| Sbjct 10810 CTCAATACTGTCATCCTTCATTGTGATGAGGAAACAGCTTGACAGTTGAGGA--ACTGGT 10753 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||||| ||| || | || || ||||| ||||| ||||| |||| ||| | |||| Sbjct 10752 GTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGAACCACTTTTGAGACATCAGATGA 10693 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 |||||||||| || | || | ||| ||| | ||||| || | | |||||||| || Sbjct 10692 TACGTCTCAAAGGCAGCTTCGAGATCACCACCG-TGAATGCCCAGGGACACACGCATAAA 10634 Query 63586 CATGTGCTGAGGTCTTTC 63603 |||||| || ||||| || Sbjct 10633 CATGTGTTGGGGTCTCTC 10616 >seq2517 Length=16602 Score = 233 bits (258), Expect = 2e-56 Identities = 443/648 (68%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| || ||||| || |||||||| ||| | |||||| |||| ||||| || || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 || || ||||| |||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 32822 || ||||| ||||| | ||||| || || || ||||| | || | |||| | || | Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 32823 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 | | || | |||||| | ||||||||||||||||||| || ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || || || ||||| ||||| | | || || | || || || || || Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATG 11769 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | ||| ||||||||| || || ||||| |||| ||| ||||| | || ||||| || Sbjct 11768 AGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAA 11709 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-TGC-TAAATTTTCATTCACTA 33060 | ||| |||| | || |||||| || || |||| ||| | ||||||||| || | Sbjct 11708 CGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGACGA 11651 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 | || || ||||| ||||| || || | || || ||||| | ||| | Sbjct 11650 TACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCAT 11591 Query 33121 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180 | ||| | | ||| || ||| |||||| | | ||| || ||||| || ||||| || | Sbjct 11590 TCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGG 11531 Query 33181 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 33240 | || | ||||| || || | | |||||| || ||||||||||| || | ||||| | Sbjct 11530 AAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGA 11471 Query 33241 ATCTATTTGGATTTTTTGCAAGGATTGGTTCCATAACTAAATTAACAA 33288 | || | ||||| | |||||| || || ||| | | |||| || Sbjct 11470 ACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGAA 11423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633521827236000