Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1681 136 3e-27 seq109 86.0 5e-12 seq2406 84.2 2e-11 >seq1681 Length=28542 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || |||||||||||| | ||||| ||| |||| ||| | ||||| ||| | Sbjct 25031 ACGATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCT 24972 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || |||||| | ||| || ||| ||||| ||||| ||||| || || Sbjct 24971 AGCGATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGAT 24912 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| ||||| |||||||||||||| |||| |||||| || || ||| Sbjct 24911 CAGCAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTAC 24852 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| ||||| ||||| || || || || ||| Sbjct 24851 AATATCCAAAAGGAATCTACCCTCCACTTGGTG 24819 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 || || ||| | || || | || |||||| || |||||| || ||| ||||| Sbjct 24447 ACGGGCAAAACGATAACTTTGGAGGTGGAGCCGAGTGACACGATTGAGAATGTGAAGGCG 24388 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 || ||| ||||||||||| |||||||| || || ||||| | || || || || || Sbjct 24387 AAGATCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGTCTCATATTCGCTGGTAAG 24328 Query 25143 CAATTAGAAGATGATCG--CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 ||| | ||||| | ||| |||| | || | ||||||||||| |||||||| || || | Sbjct 24327 CAACTGGAAGACGGTCGTACACTTTCGG--ACTACAATATTCAGAAAGAATCTACTCTTC 24270 Query 25201 ATTTAGTGCT 25210 || | ||||| Sbjct 24269 ATCTTGTGCT 24260 >seq109 Length=140612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || || || || ||| | ||||| | ||||| ||| | | Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||| ||| ||||| ||||| || || || || ||||| | || || Sbjct 74800 GATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCAG 74741 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| |||||||||||||| ||||||| || ||| | |||||||| Sbjct 74740 CAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAAC 74681 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || || ||||| || || || || ||| Sbjct 74680 ATCCAGAAGGAATCTACACTTCACTTGGTG 74651 >seq2406 Length=17766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 25096 AAGAAGGG-ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 ||| |||| ||||| || ||||||||||| |||| ||||| ||||| ||| | |||||| Sbjct 17766 AAGGAGGGCATTCCCCCAGACCAACAGCGTCTTATCTTTGCTGGCAAGCAACTGGAAGAT 17707 Query 25155 GATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||| ||| | || || || |||||||| || ||||| |||||| | || || Sbjct 17706 GGTCGTACTCTTTCTGACTATAACATTCAAAAGGAGTCCACCCTACATCTTGTACT 17651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433254538716650