Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2517 264 1e-65 >seq2517 Length=16602 Score = 264 bits (292), Expect = 1e-65 Identities = 409/584 (70%), Gaps = 0/584 (0%) Strand=Plus/Minus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||| | || ||||| || || || || || ||||| || ||||| ||||||||||| Sbjct 12065 TTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCATTA 12006 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| || | ||| || | || || || ||||| |||||||| ||||| || || | Sbjct 12005 CTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAATGAA 11946 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || | |||||| || || || || || |||| ||| || || | | || Sbjct 11945 CCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTAGCT 11886 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | ||||| | | |||||||||||| || ||||| | ||| || || ||| Sbjct 11885 TCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGGGTT 11826 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || || || || || ||| |||| || | | ||| || | ||||| || ||||| | Sbjct 11825 TCAATTGCATTGAAGAGGAAATCACGTTTGGCCGGCTCCTGAATGTAAGTGTCGATGAGG 11766 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 |||||||||||||| || |||| ||||| | |||||||| | || |||||||| | | Sbjct 11765 AGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAACGA 11706 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 ||||| | | || |||||||| | || || ||||||||||||||| |||||| Sbjct 11705 GCTTCGGGCACTTGAACTTCTTGGCAGAAGTTCATGCAGAGATTTTCATTGACGATACCA 11646 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||| || ||||| || || | | || ||||| || ||| | || || || Sbjct 11645 TCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTCATTCAGT 11586 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 | ||||| |||| |||||||| | | ||| || ||||| || ||||| || || || Sbjct 11585 CTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGGAAGCG 11526 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGG 93663 | || || ||||| | ||||| || || ||||||||||| || Sbjct 11525 ACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGG 11482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556763975828400