Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1681 107 2e-18 seq109 104 2e-17 >seq1681 Length=28542 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 111179 GTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGG 111238 |||| | ||||| |||||||| || || | ||||| ||||||||||| | ||| | Sbjct 25036 GTTTGACGATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCG 24977 Query 111239 AACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCG 111298 | || |||||| | | | | || || || || ||||| ||||| |||| Sbjct 24976 AGCCTAGCGATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTC 24917 Query 111299 TCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 111358 ||||| || | ||||| | ||| ||||||||||| || ||| ||| || | | Sbjct 24916 CAGATCAGCAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGG 24857 Query 111359 ATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 | || ||||| ||||| |||||||| || || || ||||||||||| || ||||||| Sbjct 24856 ACTACAATATCCAAAAGGAATCTACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGCA 24800 >seq109 Length=140612 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||||||||| | || |||||||| || || | ||| || ||| Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 |||| | ||| | || || |||||| || || || || |||| ||||| Sbjct 74800 GATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCAG 74741 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || |||||||||||||||||| ||| | | ||||| || Sbjct 74740 CAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAAC 74681 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||||||||| || || ||||||||||| || ||||| Sbjct 74680 ATCCAGAAGGAATCTACACTTCACTTGGTGTTGCGTCTTCGTGGTGG 74634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422968282822000