Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1681 150 2e-31 seq109 149 5e-31 seq2406 82.4 6e-11 >seq1681 Length=28542 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || |||||||| ||||||| ||||| || | | | Sbjct 28352 ATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTGAGCCAAGC 28411 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || ||||||||||||||||| ||||| || || ||| Sbjct 28412 GATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAA 28471 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| ||||| || | || ||| || ||| ||||||| |||||| Sbjct 28472 CAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGATGGTCGTACCCTCTCCGACTACAAC 28531 Query 22399 ATTCAAAAAGA 22409 || || ||||| Sbjct 28532 ATCCAGAAAGA 28542 >seq109 Length=140612 Score = 149 bits (164), Expect = 5e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| ||||| ||||| || ||||| ||||||||||||| || || | Sbjct 74861 GATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGC 74802 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| | || || | || ||||||| ||| |||||||||||||| | ||||| Sbjct 74801 AGATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCA 74742 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||| | || || ||||||||||| || || ||| ||| || |||| |||||||| Sbjct 74741 GCAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAA 74682 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||| || || ||||| || | || || || ||||| | || || ||| || Sbjct 74681 CATCCAGAAGGAATCTACACTTCACTTGGTGTTGCGTCTTCGTGGTGGTGTT 74630 >seq2406 Length=17766 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 22315 AAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 |||||||| ||||| || || ||||| |||||||| ||||| ||||| || | || ||| Sbjct 17766 AAGGAGGGCATTCCCCCAGACCAACAGCGTCTTATCTTTGCTGGCAAGCAACTGGAAGAT 17707 Query 22375 CACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || | || || || ||||||||||| || |||||| ||||| Sbjct 17706 GGTCGTACTCTTTCTGACTATAACATTCAAAAGGAGTCCACCCTACAT 17659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419656844299150