Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6887 107 4e-18 seq194 89.7 1e-12 >seq6887 Length=2215 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | ||||||||||| |||| Sbjct 729 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTTGAGC 670 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 669 CCCACATCGGGC 658 >seq194 Length=114854 Score = 89.7 bits (98), Expect = 1e-12 Identities = 296/457 (65%), Gaps = 10/457 (2%) Strand=Plus/Plus Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 || ||||| |||||| |||||||||| | || || ||| | ||| |||| ||| Sbjct 14834 GAACGTTCCATTCCCTCTTTGGTGGATGGTTTAAAACCCGGCCAGAGAAAGGTCCTTTTT 14893 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682 | || || || || | || | ||||| ||||| ||||| || | ||| ||| Sbjct 14894 ACTTGCTTAAAACGCAATCAAGTGAAGGAAATCAAGGTGGCTCAATTGACCGGTGCTGTG 14953 Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCA 218740 | ||||| || ||| ||||| ||||| | ||| || ||| ||||| | | Sbjct 14954 GCGGAAATGTCCTCCTATCATCATGGTGA--AATGTCGTTGATGGGAACCATTATTAACC 15011 Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 |||| ||||| | ||| || ||| || | || | |||| || | ||||||||| | Sbjct 15012 TGGCTCAGGATTTTGTTGGTTCTAATAATCTCAATCTTTTGCTTCCTATCGGTCAGTTCG 15071 Query 218801 GTTCTCGTCTATTGG---GTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGT 218857 || |||| ||||| |||| ||||| |||||||| | || ||||| ||| || Sbjct 15072 GTACTCG---ATTGGCTGGTGGTAAGGACTCCGCTTCTGCGCGTTACATCTTCACAGCGT 15128 Query 218858 TGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTG 218917 || || | | | | |||||| || | |||||| | |||| || || ||| Sbjct 15129 TGAGTCCTCTAAGTAGAAAAGTGTTCCATGAACACGATGACGCTATCCTCAATTACCTTC 15188 Query 218918 AGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCG 218977 | || || | |||||| |||||||||||| | ||| || || | |||| Sbjct 15189 AAGATGACAATCAAAGGATTGAACCCGAGTGGTATATTCCTATCATCCCTATGGTGCTTA 15248 Query 218978 TAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTAC 219014 | || ||||| | || || || || |||| ||||| Sbjct 15249 TTAACGGTGCGGAGGGCATTGGCACCGGGTGGAGTAC 15285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027653616998310